Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03203 ATGGTTCTGAATATGAGTGGTAATGACTTCTATGGAGAAATTCCTTCTATTTTGGGGAATCTTTTCAGGCCCACAACTCTTGATTTAAGCAAACAAAGTCTCTCCAGTAAATTGCCATATAAAATTTCGAGGCTTCCCAGTTTACAGGTCATTGCTCTTCAAGAGCACAAGTTGTCTTGGGTGATACCTGAAGGGTTTAGCAGCTTGACCAATTTAAAATACGTGAACCTAAGCTCTAACAAGTTTTCTGTGTATGTTCCTAAGAGCTATGGCTTTCTTCGATCTTTTGATCTAAACACCATCTCCAAATCCGTTGCGTTCGTGCATCTCAAAAGAGATCCTTCCCCGAAGAGCCTTTCTTTGGTTGCAGATCCTCCCTCCTTCGACCAAAACACGTCGTCCGAGGCCAAACGCGTCGTCAATCGCTACTCAGGTTGCCGGCGGAAGGTCGGACTTACTAGATTTTGGTGCCGGTGTGGTGAACTCTTCTACACGGAGCATCGGTACTCCGATCGCGATGACTGCAGTTACGACTACAAAGCCGCCGGCAGAGAAGCCAGGGAGAATCCGGTGATGGATCATAGAGATAATGGTAAAGAAGCAGTTTCTGATCACGTTTTGGATTCTTTCACGAAAGAGAAGATGAAGAGATCCGTTTTGGGTTCTTGCAAAGCTGAAGTTGAATCAGTGGCGGATGAGGAAAACCCTTCCCCAGAACTGAGTCAGTGTGATATCTGCCTCAAGACTTTTGGCTGCGGCAAGGCTTTAGGTGGTCACAGAAGATCCCACTTTATGAAACAGCAGCAACAAAAGAAGGTAAAGACCCGTTTCACTTATAACCACACATCAAAACCTGGTGGTGATAATAACATTAGGGTTATCTGTGATTTTGACGATGATGATGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCCACCAAGAATGCTTTGTTTGGTCACATGAGGTCTCATCCTGAGAGACCATGGAGGGGTGTGTCCCCTCCTACTCAAAAGAACTCATCTTCTCCTTCTTCTTCTTACTACTATTCTCCTTCTTCTTCCTCCAATTCTGATTCAATGGAGAAGAATAAGGAGGATCATGATGTTGATGATGGTGGCGACCGACTGATCTCACCTTATGAACATCGCAGAAATGAGATTGATCTTTTAATGTGTACTTCACCCAGCTGGCTTTGTAAAGATACAAGAGGCAGAAGCTCTATTGGTGCGTATCAGGCGGCTGAAACTCTTATCTACATGAGTTGTTCTAACTACTTTTCTAGTCATGAGCGGAATAGGGTTTTCCCCAAGAAGGACGAAGTGCTGCCAAAGAGTGCCCCAACCCTAATCAAACAGCGCAAAAGGAAGACTTTTGAATCGTCACCCAGTAAGAAAGATAAGGTGAAGAAGATAAAGTTTTTATTTAAAGGTGAATTGAATTTGGGAAGCACGTCTAATGGGGTTGGGGAATGTGATGGTGAGGGTAATGAGCTGAACAGGTGCAAGGGTTTATCTGAATCTGGGGTTGATCATAACCATGATGAGAAGAAGATGAAGAGTTTTGATGATTTGAATGGTGAATCGGTTACCCCAACTATGCAAGATCATGTTGGTCCTTCTGATGTGAAGAAGATTAATATGGATAAGAAAGGGAAGAACGGTAAGAAATTGGTACTGAATTCAAGGACAAAAGACTCGGAATCTGAGAAAGCAAGTCAAGAGAAAGCAGATTGGTATAAATGTGCTGCATGTGGAAAAAGCTTCAAAACTTTCCAAGGCCTAGGAGGACACAGATCAGTACACAAAGAGAAGAATACTGTGAGCATTGATGAGCCAAACCCCTCGGAAGCTGTAGCTGAACAAAACAACTTTAGCAGCTCCAGTAACATGAACAAGATGGAGGAGCCATTATTTAATGAAACAACCTTAGCAGACCAGCCATGCCAATCTTCAGGTGTCAAGAAACTGAACTTCGATCTGAATGAGCTGCCTTGTGCCAATGATGAGGACTGA 2019 0.4329 MVLNMSGNDFYGEIPSILGNLFRPTTLDLSKQSLSSKLPYKISRLPSLQVIALQEHKLSWVIPEGFSSLTNLKYVNLSSNKFSVYVPKSYGFLRSFDLNTISKSVAFVHLKRDPSPKSLSLVADPPSFDQNTSSEAKRVVNRYSGCRRKVGLTRFWCRCGELFYTEHRYSDRDDCSYDYKAAGREARENPVMDHRDNGKEAVSDHVLDSFTKEKMKRSVLGSCKAEVESVADEENPSPELSQCDICLKTFGCGKALGGHRRSHFMKQQQQKKVKTRFTYNHTSKPGGDNNIRVICDFDDDDGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKNSSSPSSSYYYSPSSSSNSDSMEKNKEDHDVDDGGDRLISPYEHRRNEIDLLMCTSPSWLCKDTRGRSSIGAYQAAETLIYMSCSNYFSSHERNRVFPKKDEVLPKSAPTLIKQRKRKTFESSPSKKDKVKKIKFLFKGELNLGSTSNGVGECDGEGNELNRCKGLSESGVDHNHDEKKMKSFDDLNGESVTPTMQDHVGPSDVKKINMDKKGKNGKKLVLNSRTKDSESEKASQEKADWYKCAACGKSFKTFQGLGGHRSVHKEKNTVSIDEPNPSEAVAEQNNFSSSSNMNKMEEPLFNETTLADQPCQSSGVKKLNFDLNELPCANDED 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03203 672 MobiDBLite consensus disorder prediction 320 379 - -
Vimu2g03203 672 Gene3D - 125 195 IPR035896 -
Vimu2g03203 672 ProSiteProfiles Zinc finger AN1-type profile. 137 183 IPR000058 GO:0008270
Vimu2g03203 672 ProSiteProfiles Zinc finger C2H2 type domain profile. 304 326 IPR013087 -
Vimu2g03203 672 SUPERFAMILY beta-beta-alpha zinc fingers 304 603 IPR036236 -
Vimu2g03203 672 ProSiteProfiles Zinc finger C2H2 type domain profile. 581 608 IPR013087 -
Vimu2g03203 672 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 228 669 IPR044653 GO:0003700
Vimu2g03203 672 MobiDBLite consensus disorder prediction 523 577 - -
Vimu2g03203 672 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Vimu2g03203 672 SUPERFAMILY L domain-like 2 96 - -
Vimu2g03203 672 MobiDBLite consensus disorder prediction 612 635 - -
Vimu2g03203 672 MobiDBLite consensus disorder prediction 361 379 - -
Vimu2g03203 672 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Vimu2g03203 672 SMART c2h2final6 241 263 IPR013087 -
Vimu2g03203 672 SMART c2h2final6 304 326 IPR013087 -
Vimu2g03203 672 SMART c2h2final6 581 603 IPR013087 -
Vimu2g03203 672 Gene3D Ribonuclease Inhibitor 1 124 IPR032675 -
Vimu2g03203 672 Pfam C2H2-type zinc finger 243 263 - -
Vimu2g03203 672 Pfam C2H2-type zinc finger 304 328 - -
Vimu2g03203 672 Pfam C2H2-type zinc finger 581 605 - -
Vimu2g03203 672 MobiDBLite consensus disorder prediction 335 360 - -
Vimu2g03203 672 MobiDBLite consensus disorder prediction 597 635 - -
Vimu2g03203 672 ProSitePatterns Zinc finger C2H2 type domain signature. 306 326 IPR013087 -
Vimu2g03203 672 MobiDBLite consensus disorder prediction 543 577 - -
Vimu2g03203 672 SUPERFAMILY AN1-like Zinc finger 130 191 IPR035896 -
Vimu2g03203 672 Gene3D Classic Zinc Finger 554 639 - -
Vimu2g03203 672 Gene3D Classic Zinc Finger 241 326 - -
Vimu2g03203 672 ProSitePatterns Zinc finger C2H2 type domain signature. 583 603 IPR013087 -
Vimu2g03203 672 SMART AN1_Zf_4 144 180 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03203 Vimu-Chr2 38872991 38879535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03203 3 97 Receptor kinase-like Gene Family AT4G36180 38.947 5.97e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g03203 zf-C2H2_6 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03203 - - var:108344105 501.516