Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03202 ATGGATCTTTCTGGGAAAAGGGTTTCAGTTTCAGGTGAAGGGAGCAGCAGCAATGGTGGTGCTGGTGGCAGTAACCTTCAGCTTGTCCCTTATTCAGAGAACAAAAAAGTTTGCCCTTTCTGCCAGCGTGGATTCAAATGCGGAAAATCCTTGGGAGGGCACATCAAAATGCACAAGAAGAGCCGCAGAACATTCAAGTTTACCCATAAGAAGAAGAGCAACAGAAGGGGGCTTGGATCCTCTTCAGCGCTAACAATCCCAACACCCTTGAATGTTGTAAGAGGTTGCGAGATCGTAGCACCAATCAGAATTGTTGAGAATGGAGCAAGTGGTGCTGCGGTTACAACACTCAGAACTCTCGAAAATGGTGCAAGTGGTGCTGAAGAACCACTCAGAATTGATGAAACCGGTGCAAGTGGTGCTGAGGAACCACTCAGAATTGATGAAACCGGTGCAAGTGGTGCTGAAGAACCACTCAGAATTGATGAAACCGGTGCCAGTGGTGCTGAGATCCATGATATGTCGATGTCCTTGGTGGGTTGCGGATGGAAGACAAAGGGAAGGAGGGGAAGCAACGAAGACACGAACAACTTGATGAGAGCGAATCGTTATTCTTATTCCGATGATGAGTACGAGGAATGTGATGTGGAAGATTCGTGTGATGAGGATGACTATGATAACATTAAGTTGCGGAAATGGTTAAGGAGTCGAGGGTACGCAACAGGTGCGCATAAGATCTGTTGGACTAAGAGAATGCTGATGTGCAAAGTCTGCAACCAGTATTTTAGAACTCTGTCTGCTGTGATCAGTCATGTGGATGAGTGTGCCCTAACCAATAGTGAAGTTGAAATGGAAAGGGAGGGAAGTGAAGAGAATGGTAGAATTGAAGTTGATCAAGCTGTTGGTGAGCAGCAAAACGGAAACGGAGAAGGTGAAGTTACCAAAAGGCCTGAAGATGCTCCAGTGACAAAAGACAATGGAGTTTCTTCTTCTTCTGTACAACACAAACAGCATGTATCAACTTTAGCTGCTACAACCAAAGAACTTCAATTGGATCTCAATCAAACGCCTCCTCCTGAGGAGGATTGA 1089 0.4573 MDLSGKRVSVSGEGSSSNGGAGGSNLQLVPYSENKKVCPFCQRGFKCGKSLGGHIKMHKKSRRTFKFTHKKKSNRRGLGSSSALTIPTPLNVVRGCEIVAPIRIVENGASGAAVTTLRTLENGASGAEEPLRIDETGASGAEEPLRIDETGASGAEEPLRIDETGASGAEIHDMSMSLVGCGWKTKGRRGSNEDTNNLMRANRYSYSDDEYEECDVEDSCDEDDYDNIKLRKWLRSRGYATGAHKICWTKRMLMCKVCNQYFRTLSAVISHVDECALTNSEVEMEREGSEENGRIEVDQAVGEQQNGNGEGEVTKRPEDAPVTKDNGVSSSSVQHKQHVSTLAATTKELQLDLNQTPPPEED 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03202 362 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vimu2g03202 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vimu2g03202 362 MobiDBLite consensus disorder prediction 9 25 - -
Vimu2g03202 362 MobiDBLite consensus disorder prediction 324 353 - -
Vimu2g03202 362 MobiDBLite consensus disorder prediction 283 362 - -
Vimu2g03202 362 SUPERFAMILY beta-beta-alpha zinc fingers 37 272 IPR036236 -
Vimu2g03202 362 MobiDBLite consensus disorder prediction 1 25 - -
Vimu2g03202 362 MobiDBLite consensus disorder prediction 283 297 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g03202 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03202 - - var:108345409 482.256