Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03196 ATGTCTGCGGGCATATTGACAGCTATGAGTAGCGTGACTAATGGGGATGATGATCAGAAGATATACAGAGGTCGGTCATCATCATTGGATGAAGAAGCCCGTGTTGGAGGTAACACGGGAGGAGAAGGAGAAGTGCCTCTAAAGAAAGGCCCCTGGACTGCAGGAGAGGATGCAATTTTATTAGAATATGTTAATAAGCATGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTAAGGTGGGCGAATCACTTGAGACCGGATCTGAAAAAGGGTGCATTTACCCAAGAGGAAGAGAACCGAATCCTTGAACTCCACGCAAAACTGGGGAACAAATGGGCTCGGATGGCTTCTGAGGTTTGTAGAGCTGTCACTCCCTTTCAATGTTTTGTCATTTTTTTCTGCTAG 441 0.4649 MSAGILTAMSSVTNGDDDQKIYRGRSSSLDEEARVGGNTGGEGEVPLKKGPWTAGEDAILLEYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTQEEENRILELHAKLGNKWARMASEVCRAVTPFQCFVIFFC 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03196 146 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
Vimu2g03196 146 FunFam MYB-related transcription factor 48 101 - -
Vimu2g03196 146 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Vimu2g03196 146 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 33 130 - -
Vimu2g03196 146 Gene3D - 48 100 - -
Vimu2g03196 146 ProSiteProfiles Myb-like domain profile. 97 140 IPR001005 -
Vimu2g03196 146 CDD SANT 51 96 IPR001005 -
Vimu2g03196 146 SUPERFAMILY Homeodomain-like 50 126 IPR009057 -
Vimu2g03196 146 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 133 IPR017930 -
Vimu2g03196 146 MobiDBLite consensus disorder prediction 16 50 - -
Vimu2g03196 146 Gene3D - 101 140 - -
Vimu2g03196 146 SMART sant 101 137 IPR001005 -
Vimu2g03196 146 SMART sant 48 98 IPR001005 -
Vimu2g03196 146 Pfam Myb-like DNA-binding domain 102 131 IPR001005 -
Vimu2g03196 146 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03196 Vimu-Chr2 38394728 38398624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03196 47 131 MYB Transcription Factor Family AT2G32460 80.000 5.61e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g03196 Myb_DNA-bind_6 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03196 K09422 - gmx:100800658 210.305