Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03175 ATGGCTATGGCAGCCCCTGGGCAACTCAACGTGAACGAGTCACCGTCGTGGGGGTCCAGAAGCGTCGACTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGGTTGAGGTGTGATGTGGTTCCAGGTTTTGGACATAACATACGTTTGATCATTCAAGTTTACATGGCTAGAGAGATCAAAACTGGCGAAATTGTTGCTCTGAAAAAGATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACAGCTATTCGTGAAATCAAAATTCTAAAGAAGCTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGGACCTGAGAAAGATGAACAAGGGAGGCCAGGCAAGTTATTCATTTTCACCATAATAGTCAATTTACTTATTTCATTTACACAGTATCTTTCTAGTACCGTTTCTGATGGCTATTGGCAGATCAAGGTCATTTGGAGAGTTCAGAGTGTTCTCAGTTTCTGTTTCAACTCTGTCTGTGGCTTTAGGTTCAGAACTTCAATTGGATTTATGGACTTGCCAAATTTTTGGAATGCTCTTCCTTCTTGTGTAGACATGGCTGAATCTTTGAAAACTATAGTTTCCAATTCTTCCCCAAAATTAATTTGCTCAGCTGCATATTCATTTTTGGAGGCTTCAGTTGGAGTATATGATGACAAAAAGGGTTCAAGATTTGAGCTTCCAACTATACAACATAATTCTGAACAAGGATCAGAAGCTGAAATGGATAAAGATTTCCCCATTGAAGCAACTCGAATAGAAGTTGACAAGGTTTACACCAGGAGAAAGAAAATTCCAGATATGATGCAAGTCCATGAATCCAATCCAAGTCCTTCGTGA 870 0.4011 MAMAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGLRCDVVPGFGHNIRLIIQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPGKLFIFTIIVNLLISFTQYLSSTVSDGYWQIKVIWRVQSVLSFCFNSVCGFRFRTSIGFMDLPNFWNALPSCVDMAESLKTIVSNSSPKLICSAAYSFLEASVGVYDDKKGSRFELPTIQHNSEQGSEAEMDKDFPIEATRIEVDKVYTRRKKIPDMMQVHESNPSPS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03175 289 Gene3D Phosphorylase Kinase; domain 1 10 128 - -
Vimu2g03175 289 PANTHER CELL DIVISION PROTEIN KINASE 23 132 - -
Vimu2g03175 289 ProSiteProfiles Protein kinase domain profile. 25 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03175 289 Pfam Protein kinase domain 55 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03175 289 SUPERFAMILY Protein kinase-like (PK-like) 19 112 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03175 Vimu-Chr2 37753251 37765600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03175 1 121 Core Cell Cycle Gene Families AT5G10270 74.590 1.35e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu2g03175 Pkinase 8.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03175 K08819 - csin:114293090 200.29