Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03173 ATGGTGTCTTTCTGGGGACCCCAGATAGGGGGGAGTGTTGGGATTTTGAAAAAGGTTGGAAATTTGTTTAGGGAAAAGCTTTGGAGTGGTGTTTTTGATTGGGATACAATGGGATCTCAAGGTAATGGGCAACAGTCTCATTTACAGTCTTCATCTTTGTCTAGGCAAGGTTCATGGTATAATCTTACTCTTGATGAGGTTAGTAGTCAATTAGGAGACTTAGGGAAGCCATTGGGTAGCATGAACCTTGACGAGCTTCTTCAAAATGTGTGGACTGCCGAAGCAAGTAAGTCTTCGGTGATAGGTGCGGATAGTGAGAACATTTCGTCCTCTTCCTCGCTTCAGCGGCAGGCCAGCCTGACGCTGGCTCGTGCGTTGAGTGGGAAGACTGTGGATGACGTGTGGAGGGAAATTCAGCAAGGGCAGAAGAAAAGGTATGGAGGGGAAGTGAAAACTCAGGAGGGAGAAATGACTTTTGGTGAGACAACCTTGGAAGATTTCTTGGTGCAAGCTGGGCTTTTTGCTGAAGCTTCTATCAGTCCAGCTGTTGGGTTGGATACAATGGATTTCTCAGCAGCTCAAGGTTTCCAGCAGAAAACGGGCTTGTCATCATCCCCTTCTATTGGCAGTTTATCAGACACGAGACCGGGCAGGAAAAGGGATGCTCCTGATGCATATGAGAAAACCCTCGAGAGGAGGTTGAGGAGGAAGATCAAGAATAGGGAATCTGCTGCTAGGTCACGAGCTCGTAAACAGGCTTACCATAATGAACTGGTTGGCAAGGTTTCCCGTCTAGAAGAAGAAAATGTAAAGCTAAAGAAAGAGAAGGATTTGCTGTGTGGATTGAATGTGTTTTGCAGACTATTTGGTAACCTTGTCCTGGATTTTATCATCCTTGGGGAAATGGGAACTTGCACCATTATAGTGCCGCCACAACGCTATAGAATGGCGTTTTTCACCCCTTCACCCTGGGCAATCTATGAACGGAGTCTCACTGTGGACAATGGTGTGTTTATATGGTAG 1023 0.4633 MVSFWGPQIGGSVGILKKVGNLFREKLWSGVFDWDTMGSQGNGQQSHLQSSSLSRQGSWYNLTLDEVSSQLGDLGKPLGSMNLDELLQNVWTAEASKSSVIGADSENISSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKRYGGEVKTQEGEMTFGETTLEDFLVQAGLFAEASISPAVGLDTMDFSAAQGFQQKTGLSSSPSIGSLSDTRPGRKRDAPDAYEKTLERRLRRKIKNRESAARSRARKQAYHNELVGKVSRLEEENVKLKKEKDLLCGLNVFCRLFGNLVLDFIILGEMGTCTIIVPPQRYRMAFFTPSPWAIYERSLTVDNGVFIW 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03173 340 MobiDBLite consensus disorder prediction 197 224 - -
Vimu2g03173 340 CDD bZIP_plant_BZIP46 232 280 - -
Vimu2g03173 340 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 230 284 - -
Vimu2g03173 340 Pfam bZIP transcription factor 232 278 IPR004827 GO:0003700|GO:0006355
Vimu2g03173 340 Coils Coil 255 275 - -
Vimu2g03173 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 230 279 IPR004827 GO:0003700|GO:0006355
Vimu2g03173 340 SUPERFAMILY Leucine zipper domain 232 283 IPR046347 GO:0003700|GO:0006355
Vimu2g03173 340 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 53 275 IPR043452 GO:0003700|GO:0045893
Vimu2g03173 340 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 235 250 IPR004827 GO:0003700|GO:0006355
Vimu2g03173 340 Gene3D - 230 282 - -
Vimu2g03173 340 SMART brlzneu 228 295 IPR004827 GO:0003700|GO:0006355
Vimu2g03173 340 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03173 Vimu-Chr2 37671433 37672895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03173 49 278 bZIP Transcription Factor Family AT3G56850 44.151 2.14e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g03173 bZIP_1 2.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03173 K14432 - gmx:100798549 396.741