Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03169 ATGAGTTTGAGATATGGTAGTGTGAGTTTTGTTGCTTTAGTGCTTTTGCCACTCATGGCTTCTGCAGCTTCAGTTGTGAAGAACCTTCCTGGTTATGAGGGCAACCTTCCTTTCAAGCTTGAAACTGGATACATCGGAGTAGGAGAGGAGGGAGTAAATATATTTCACTTATTTGTTGAATCTCAAAGAAACCCCTTCATTGATCCAGTGCTACTATGGTTTGTTGGAGGTCCAGGTTGTTCTGCACTATCAGCGTTCTTTTTTGAAAATGGGCCTTTAATAATGAATGGTGATAACAGTGGAAACCTTCCAACACTTGAGTTGAACCCATATGGTTGGTCACAGACATTGAATATGCTATACATAGATATGCCAGTAGGCACAGGATTTTCATACTCAGAAACCCAACAAGGCTATTACAGTAATGACACGTTATGGGTTGACCATACTTATGAGTTTCTACAAAAGTGGTTTATTGATCATCCAAAGTTTAACTCAAATCCATTCTACATTGGTGGTGGTTCATATTCAGGATTAATTACAGGACCTCTTGTTCAAAAGGTGTATGAAGGGCAGGTTATAAAGCAAGAAACAAGCCACTCATCAACATCAAAGTACAAAAGGAAACCAATAAGCCTTGTCGCGATAGGTTACGTACTTGCGAGCCCAGCTGTTGACCGGTTTGAAGAAGAAAACATGAAAATTGTGTATGCATACCAAAGGAGTCTTATATCCGAAGTACTCTATAAGTCTATTAAAGAAAACTGTAACGGTGATTATGTAAACATCGATCCACAAAACACGAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTTGTTCGTTACATAAATGAACAACAAATCATGGAACCTCTTTGTGTTACTACGCCTGGTTTGAAACGAGAAATGCTACAAGAACTTCAAGATCCTCCTACATTTTGGTGTAGAAGCTATTATCATATCTTTGTCGACAAATGGGCAAACGATGAAAATGTGAGGAAGGCCCTTCATGTAAGAAAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGGACAATGGCATACGCCCAAACTTTGCAAAACTCAGTACAATATTATCGGAATCTCACAAAAGCCGACCTTGAAGCTCTCGTTTACTGTAGTGATCTTGATATGAGTGTTCCACATCTGGGTACACAACATTGGATCAATTCGTTCAACATGACCATACGTGACAAATGGCGTGCATGGTTTGTCGACGGTCAAGTTGCCGGGTACACAGAACTCTATAAAATGAAAGAAGATCACTTCTTTACATATGTAATCGTGAAGGCAAAATTTTCTCTTCAGAATTTTGATGATGTGCATTGTCATTCCAATCTAATGCAGGGTGCTGGACATGTGGCTCAAACATTTAAACCCAAGGAAGTTTATAATTTGATCAATAGATGGTTTTCATTTTCTCTTATCTAA 1455 0.389 MSLRYGSVSFVALVLLPLMASAASVVKNLPGYEGNLPFKLETGYIGVGEEGVNIFHLFVESQRNPFIDPVLLWFVGGPGCSALSAFFFENGPLIMNGDNSGNLPTLELNPYGWSQTLNMLYIDMPVGTGFSYSETQQGYYSNDTLWVDHTYEFLQKWFIDHPKFNSNPFYIGGGSYSGLITGPLVQKVYEGQVIKQETSHSSTSKYKRKPISLVAIGYVLASPAVDRFEEENMKIVYAYQRSLISEVLYKSIKENCNGDYVNIDPQNTKCVSDYEAYSELVRYINEQQIMEPLCVTTPGLKREMLQELQDPPTFWCRSYYHIFVDKWANDENVRKALHVRKGTKEEFLRCNRTMAYAQTLQNSVQYYRNLTKADLEALVYCSDLDMSVPHLGTQHWINSFNMTIRDKWRAWFVDGQVAGYTELYKMKEDHFFTYVIVKAKFSLQNFDDVHCHSNLMQGAGHVAQTFKPKEVYNLINRWFSFSLI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03169 484 Gene3D alpha/beta hydrolase 19 303 IPR029058 -
Vimu2g03169 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 440 IPR001563 GO:0004185|GO:0006508
Vimu2g03169 484 Gene3D - 316 482 - -
Vimu2g03169 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Vimu2g03169 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Vimu2g03169 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Vimu2g03169 484 SUPERFAMILY alpha/beta-Hydrolases 26 480 IPR029058 -
Vimu2g03169 484 Pfam Serine carboxypeptidase 30 480 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03169 Vimu-Chr2 37585039 37605082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03169 20 53 Calmodulin-binding Proteins AT2G22960 58.824 3.37e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03169 K16296 - gmx:100798023 510.76