Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03168 ATGCGATGCGATTCTCTGCTTTACGTTATATCCCTCACTTTGTATATGCAGGCCATGGATTCATTTGAGCCAGATGGAAACGGAAAGGAGGAGTCGCTTCCACCACCACCTCCTGTTGTTCCCTCTAATGTGGTACCTCTAAAAGCTGAAGAAGTACTCTCCCATGCTGAACCTGTAAAGAAAAAGGTTTCTCGACTTCCAATTGCCAGACGGGGTCTGGGATCAAGAGGAAATAAAATACAATTACTAGCTAATCACTTCAAAGTTAATGTCACTAAAACCGATGGACATTTCTTCCATTATAGCGTGGCTTTTACTTATGAAGATGGACGTCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATTATGAACAGGGTGCAGGAAACGTACCATTCTGACTTAAATGGTAAGGACTTTGCTTATGATGGGGAGAAAAGTTTGTTTACTCTTGGCTCCCTTCCTCGGAATAAGCTTGAATTTGAAGTTATTCTGGAGGATGTCACCTCTAACAGGAACAATGGCAATTGCAGTCCTGACGGTAAAGGGGACAATGAGAGTGACAGAAAGAGAATGCGGCGTCCTTACCGTTCAAAATCATTCAAAGTAGAGATAAGCTACGCAGCAAAAATTCCGATGCAGGCCATCACCAACGCCTTACGTGGTCAAGAGACAGAGAATTTTCAAGAAGCCATTAGAGTTCTTGATATAATTTTGAGGCAGCATGCTGCTAAACAAGGCTGCTTGCTTGTACGCCAATCCTTTTTCCACAATGATCCAAACAATTTTGCTGATGTAGGAGGTGGTGTTCTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGACTGTCTCTCAACATAGATGTTTCAACTACCATGATAATTACTCCCGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTTAGAGATCCGTTTCAACTTGACTGGGCTAAGGCCAAAAGAACCTTAAAGAATCTGAGGATTAAAACCAAGCCATCCAATCAAGAATTCAAAATTAATGGGCTCAGTGAACTCCCATGCAGAGAGCAGACTTTTACTTTGAAGGGTAAAGGTGGAGGGGATGGTGGAGATGGTAATGAGGAAATCACTGTTTATGATTATTTTGTGAATGTTCGAAAGATAGATTTGCGATACTCTTCTGATCTTCCATGCATTAATGTTGGCAAGCCTAAACGGCCAACTTATTTTCCCATTGAGCTTTGTGAATTGGTATCACTGCAACGGTATACAAAAGCTTTGTCAACCCTTCAAAGGGCCTCATTAGTGGAGAAATCCCGGCAGAAGCCACAAGATAGGATGAAAATTTTGTCTGATGCACTTAGACGCAGCAACTATGGGTCTGAACCTTTGCTCCGTAATTGTGGAATTTCTATAAGCACTGGTTTCACTGAAGTGGAGGGTCGGGTTTTGCCTGCACCAAGGTTGAAGTTTGGCAACGGTGAGGACCTCAATCCAAGGAATGGGAGATGGAATGTTAGCAACAAGAGGTTTGTGGAGCCGTCAAAGATAGAAAGATGGGCTGTTGCTAACTTTTCAGCACGCTGTGATGTACGAGGACTTGTGCGTGACCTGATTAGAATTGGAGATATGAAAGGAATTTCAATAGCGGAGCCATTTGATGTGTTTGATGAGAGTCCTCAGTTTAGGCGTGCCCCACCCATGGTTAGAGTGGAGAAGATGTTTGAAACCATCCAGTCTAAACTTCCTGGTGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCATTAATCAGTGTATGTGTCCTTCAAGGGTCAATGATCAATACCTTACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCATTGTTAGGTGTTGAAGTTTCTCCTTCTCTTCCCATTGTTTCCAAAGCTCCTACCCTCATTCTGGGCATGGATGTGTCACATGGCTCTCCTGGGCAGACTGATATTCCTTCTATTGCTGCTGTGGTCAGCTCTAGACAGTGGCCTCTGATATCTAAATACAGGGCTTGTGTTCGTACCCAATCTGCAAAGGTTGAAATGATAGATAATTTGTTCAAGCAAGTGTCTGAAAAGGATGATGAAGGCATCATGAGGGAACTTCTGCTTGATTTCTATTCAACTTCTGGAAGGAGAAAACCAGAAAATATTATCATATTCAGGGATGGAGTTAGTGAGTCACAGTTCAATCAAGTTTTGAATATTGAACTTGATAGTATAATTGAGGCTTGCAAATTTCTTGATGAAAATTGGGAGCCAAAGTTTACAGTAATTGTTGCTCAGAAGAATCACCACACTAGATTTTTCCAGCCTGGCTCTCCTGACAATGTCCCTCCTGGCAAGTGTTCTAGTTTTCTGCGATCTGATATTAACTTCGATGGTAGTTTCTATGGAACTAGCAGGCCTACCCATTACCATGTGCTGCTAGATGAGATTGGTTTCTCTCCGGATCAGCTACAAGAGCTTGTCCATTCATTATCATACGTGTATCAGAGGAGCACCACTGCCATTTCTGTTGTTGCCCCAATTTGCTATGCACACTTGGCGGCAACCCAGCTGGGGCATTTCATGAAATTTGAGGAAAAGTCTGAGACAACTTCAAGCCATGGTGGAGGGAGTGGTGCTGGTGCTGTTCCGGTCCCTCAGATGCCTCCTTTGCAGGAAAATGTGCGCAACACAATGTTCTTTTGTTGA 2781 0.4275 MRCDSLLYVISLTLYMQAMDSFEPDGNGKEESLPPPPPVVPSNVVPLKAEEVLSHAEPVKKKVSRLPIARRGLGSRGNKIQLLANHFKVNVTKTDGHFFHYSVAFTYEDGRPVEGKGVGRKIMNRVQETYHSDLNGKDFAYDGEKSLFTLGSLPRNKLEFEVILEDVTSNRNNGNCSPDGKGDNESDRKRMRRPYRSKSFKVEISYAAKIPMQAITNALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTKPSNQEFKINGLSELPCREQTFTLKGKGGGDGGDGNEEITVYDYFVNVRKIDLRYSSDLPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQDRMKILSDALRRSNYGSEPLLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSNKRFVEPSKIERWAVANFSARCDVRGLVRDLIRIGDMKGISIAEPFDVFDESPQFRRAPPMVRVEKMFETIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPSRVNDQYLTNVMLKINAKLGGLNSLLGVEVSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKQVSEKDDEGIMRELLLDFYSTSGRRKPENIIIFRDGVSESQFNQVLNIELDSIIEACKFLDENWEPKFTVIVAQKNHHTRFFQPGSPDNVPPGKCSSFLRSDINFDGSFYGTSRPTHYHVLLDEIGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGHFMKFEEKSETTSSHGGGSGAGAVPVPQMPPLQENVRNTMFFC 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03168 926 ProSiteProfiles Piwi domain profile. 586 887 IPR003165 GO:0003676
Vimu2g03168 926 SUPERFAMILY PAZ domain 295 457 IPR036085 GO:0005515
Vimu2g03168 926 CDD Piwi_ago-like 461 881 IPR045246 -
Vimu2g03168 926 Gene3D - 481 647 - -
Vimu2g03168 926 Pfam PAZ domain 304 433 IPR003100 GO:0005515
Vimu2g03168 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 59 889 - -
Vimu2g03168 926 Gene3D - 653 926 IPR036397 GO:0003676
Vimu2g03168 926 MobiDBLite consensus disorder prediction 890 912 - -
Vimu2g03168 926 SMART DUF1785_2 248 300 IPR014811 -
Vimu2g03168 926 SMART Piwi_a_2 586 887 IPR003165 GO:0003676
Vimu2g03168 926 FunFam Protein argonaute 7 295 421 - -
Vimu2g03168 926 Pfam N-terminal domain of argonaute 79 238 IPR032474 -
Vimu2g03168 926 SUPERFAMILY Ribonuclease H-like 570 885 IPR012337 -
Vimu2g03168 926 Gene3D paz domain 294 421 - -
Vimu2g03168 926 ProSiteProfiles PAZ domain profile. 325 417 IPR003100 GO:0005515
Vimu2g03168 926 MobiDBLite consensus disorder prediction 171 194 - -
Vimu2g03168 926 Pfam Argonaute linker 2 domain 443 489 IPR032472 -
Vimu2g03168 926 Pfam Argonaute linker 1 domain 250 298 IPR014811 -
Vimu2g03168 926 Pfam Piwi domain 587 887 IPR003165 GO:0003676
Vimu2g03168 926 Pfam Mid domain of argonaute 496 549 IPR032473 -
Vimu2g03168 926 CDD PAZ_argonaute_like 300 416 - -
Vimu2g03168 926 FunFam Protein argonaute 3 654 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03168 Vimu-Chr2 37502593 37513495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03168 70 926 Eukaryotic Initiation Factors Gene Family AT5G43810 34.850 2.57e-151 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03168 K11593 - gmx:100820376 1627.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g03168 2 37502593 37513495 Vimu2g03168 2 37502593 37513495 ECH