Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03143 ATGTTTGTAGGAGACAAGAGGCCTGCAAGTAAGCCAAGGCAGGATTCAAATTCTTCTTCACAAAATCATGCTCCAAAAACTTCAGAATCAAATGTTTCCGTATCCATCTCTAGTAGCCTAAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAACATTTCAGGAAGGAAAATTTGATTGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAGAATACATATGCTCCCACAAGACCAGGCACTGGAATTGTGGTGGCCATTAAAAATCTTAAACCAGAAAGCTTCCAAGGCCACAACGAATGGCTTGCAGAAGTCAGTTATCTTGGGCAGCATCAGCATGACAATTTGGTGAAACTTATTGGTTATTGTTTGGAGGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAGAAAGGAAGTTTGGAGAATCATTTATTCCGAAAAGGGGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTAGCAAGAGGACTAGCATTCTTACATTCCCTGGATCAAAATGTCATCTTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGACTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGGGATGGTCCAACTGGAGATAATACTCATGTTTCAACTCGAGTAATAGGAACTCAAGGCTATGCTGCACCAGAGTATGTTGCTACAGGTCACCTGGCACCAAGAAGTGATGTATACAGCTTTGGTGTACTGTTGTTAGAATTGCTTACTGGTAGGCGTGCTGTGGAAGATGACAGACCTGGATTTTCAGATGAAACCTTGGTGGATTGGGCAAAGCCATTTTTGAGTGACAACAGAAGAGTTTTGAGAATAATGGACACAAGGTTGGGGGGTCAATACTCTAAGAAAGGGGCAATGGCTGCAGCTGCACTTGCACTGCAATGCCTCAACACTGACCCCAAATTTAGACCCCCTATGGTGGAAGTTCTAGCAGCATTGGAAGTGCTTAATTCCTCAAATTCATTCTCAAGAACACTACCAAGACCTGAGAGCAATGCAACCAAAAATTATGCTGGTCATTCTCAAAAGTAA 1101 0.4242 MFVGDKRPASKPRQDSNSSSQNHAPKTSESNVSVSISSSLKSFSLNDLKEATKHFRKENLIGEGGFGRVFKGWIDENTYAPTRPGTGIVVAIKNLKPESFQGHNEWLAEVSYLGQHQHDNLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLAFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLAPRSDVYSFGVLLLELLTGRRAVEDDRPGFSDETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAMAAAALALQCLNTDPKFRPPMVEVLAALEVLNSSNSFSRTLPRPESNATKNYAGHSQK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03143 366 Gene3D Transferase(Phosphotransferase) domain 1 141 358 - -
Vimu2g03143 366 MobiDBLite consensus disorder prediction 346 366 - -
Vimu2g03143 366 MobiDBLite consensus disorder prediction 13 33 - -
Vimu2g03143 366 MobiDBLite consensus disorder prediction 1 33 - -
Vimu2g03143 366 SMART serkin_6 55 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03143 366 PANTHER OS01G0588500 PROTEIN-RELATED 17 339 - -
Vimu2g03143 366 ProSiteProfiles Protein kinase domain profile. 55 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03143 366 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Vimu2g03143 366 SUPERFAMILY Protein kinase-like (PK-like) 29 342 IPR011009 -
Vimu2g03143 366 Pfam Protein tyrosine and serine/threonine kinase 58 334 IPR001245 GO:0004672|GO:0006468
Vimu2g03143 366 CDD STKc_IRAK 61 337 - -
Vimu2g03143 366 ProSitePatterns Protein kinases ATP-binding region signature. 61 93 IPR017441 GO:0005524
Vimu2g03143 366 FunFam Serine/threonine-protein kinase BIK1 20 140 - -
Vimu2g03143 366 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 141 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03143 Vimu-Chr2 36711387 36712926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03143 17 350 Glycoside Hydrolase AT3G07070 46.291 1.65e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu2g03143 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03143 - - vum:124843429 679.093