Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03141 ATGAATGTCGTCACTTTCAATGTAGCTTCAAATGGGGACCAAGTTAGTGTCACTATTATGAATGTTTCTGGCATGATAAACAACGTGACCCTGGAAACTTCGAATGAGGGTGCACCACCCATCATGCTCCATGGGCCCTTCAATCTCCTCTCCCTCTCTGGATCCTACTTGTACGACAACCACTACATTCTTCACCCCGGTGCCACCCCTCCCCCTCCCCCATCCTTTGGGATCCATCTCTCCAACGCTCAAGGCCAGGTTTTCACTGGCATCATTGGTGGCAAAGTCATTGCTGGTGAGAATGTCATGATCACTGTCTCCACATTTAGGAACCCTGACATTTTGAAGTACACTCCTGAAGATCAACAAGAGGATGAAACTCACAACGACAGTCATAACAACAGTTCTGGGGATTTCAGTGGGGGTGGTGACTTCATGGGGTTCAACCCACGTTGTGGAATCCGATGA 468 0.485 MNVVTFNVASNGDQVSVTIMNVSGMINNVTLETSNEGAPPIMLHGPFNLLSLSGSYLYDNHYILHPGATPPPPPSFGIHLSNAQGQVFTGIIGGKVIAGENVMITVSTFRNPDILKYTPEDQQEDETHNDSHNNSSGDFSGGGDFMGFNPRCGIR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03141 155 Gene3D - 7 133 - -
Vimu2g03141 155 ProSiteProfiles PPC domain profile profile. 1 130 IPR005175 -
Vimu2g03141 155 SUPERFAMILY AF0104/ALDC/Ptd012-like 16 119 - -
Vimu2g03141 155 MobiDBLite consensus disorder prediction 120 146 - -
Vimu2g03141 155 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 13 134 IPR014476 GO:0003680
Vimu2g03141 155 Pfam Plants and Prokaryotes Conserved (PCC) domain 8 110 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03141 Vimu-Chr2 36605727 36606230 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03141 3 147 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.389 5.18e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03141 - - vun:114188422 241.121