Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03140 ATGACTCCACCCACAAGAAAGCCAACTAATGGCTCAAAAAAGAAGTCAAGGTCCACCTCTCCAATGGATGAATGCCCTGAGTCTTCTGTGAGTGTCTTCACTTTTAACGTGGCTCCCAACAGTGATGTCATGCAGTGTATATTTGACATTGCTAGCAGGGACCAAGTTAGTGTTACTGTGATTAGTGCCACTGGCAAAATCAACAAGGTGACTCTCAAATCTTCAACCAATGGTGAACCCGATCTCATGCTCCATGGACCACTCACCTTGGTCTCCCTCACAGGCTCCTACTTATACAACAATCGGTACACCCTTCACCCTGGGGCCACCCCTCCCCTTTCCTTGTCCTTTGGGATCAACCTCTCCACCATTGGAGGCAAGGTCTTTTGTGGCGTTGTTGGTGGTAGAGTCATTGCTGGTGAGAATGTTAAGATCACAGTCTCCACCTATACCAACCCGAACATTTTGAAGTATTCGGCCGAAGGTCAAGAAGACGGTGGTAATGATAATAATGATAATGAAAATCACAAGAATAACAATTTTGGTGATGACTAA 555 0.4559 MTPPTRKPTNGSKKKSRSTSPMDECPESSVSVFTFNVAPNSDVMQCIFDIASRDQVSVTVISATGKINKVTLKSSTNGEPDLMLHGPLTLVSLTGSYLYNNRYTLHPGATPPLSLSFGINLSTIGGKVFCGVVGGRVIAGENVKITVSTYTNPNILKYSAEGQEDGGNDNNDNENHKNNNFGDD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03140 184 MobiDBLite consensus disorder prediction 1 26 - -
Vimu2g03140 184 Pfam Plants and Prokaryotes Conserved (PCC) domain 32 150 IPR005175 -
Vimu2g03140 184 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 181 IPR014476 GO:0003680
Vimu2g03140 184 SUPERFAMILY AF0104/ALDC/Ptd012-like 28 154 - -
Vimu2g03140 184 Gene3D - 30 165 - -
Vimu2g03140 184 MobiDBLite consensus disorder prediction 159 184 - -
Vimu2g03140 184 CDD DUF296 32 140 IPR005175 -
Vimu2g03140 184 ProSiteProfiles PPC domain profile profile. 27 173 IPR005175 -
Vimu2g03140 184 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03140 Vimu-Chr2 36578297 36578851 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03140 6 176 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 23.295 1.75e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03140 - - vun:114188422 186.422