Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03137 TTCTCTATTGTATGGTTCTGCGTTTTAGCACACACCACTATATTCTCTTCTATACCTTGTGGATCTGTCACTATGACTTTCTCACTCGAGAAGATCATCCAAGGCGAACAGGTCCTCACCAACGATTTTCAGGACCTTACAATAAAAGATCTGAGTGAGAAAGGCAGCGAGACAGTGATTCACGAGGTAGGTAATGGAAGCCATGGGGGAATCTGTGCTATTTGTCTGGATGAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCACGCATACTGTGTAACATGCATTCTTCGATGGGCTACGTACCGTGAGAAAGTTACTTGTCCTCAGTGTAAACATCCATTCGAGTTTCTCAATATTCATCGCACGCTTGATGGCAGCATTCAAGATTACATGTTTGAGGAGAGTGTTTGTCTGCTACTCCGGGCCTCATGGTTCAAACCTTTATCTGTTGAAGAACACGTGGTTCACGAAGATGCATACGAGGAACTAGGAGATTATTATCAGTACGAGTATGAGGATGAGGACGTGGATGATGATATGGATGAAGCTTATTATGGTGGTTCATCAAGTTTTCGTATCGGCAATCGCAGATGGGGAGACAACGGCTACGTCAGGGCTGGTCGACAAGAAGCTCGGCCAGTTAACCGAGCGAACTACCAGGATTCAGGAGCAAGTTCATCGCGAGAGCCGAAGAAGAAAGAAGTTGGGAAAAGTAGCACAGGCAGAAGGGCAAAGAGAGCACAGAAAAGGGAAGCTGCTGATAAGGCTGCTGAAGCAAAACATCAGCAGCATTTGGTAAGGCTGGGTAGGAAGTGA 828 0.4601 FSIVWFCVLAHTTIFSSIPCGSVTMTFSLEKIIQGEQVLTNDFQDLTIKDLSEKGSETVIHEVGNGSHGGICAICLDEIVLQETALVKGCEHAYCVTCILRWATYREKVTCPQCKHPFEFLNIHRTLDGSIQDYMFEESVCLLLRASWFKPLSVEEHVVHEDAYEELGDYYQYEYEDEDVDDDMDEAYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVNRANYQDSGASSSREPKKKEVGKSSTGRRAKRAQKREAADKAAEAKHQQHLVRLGRK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03137 275 SUPERFAMILY RING/U-box 71 121 - -
Vimu2g03137 275 CDD RING-HC_Topors 72 118 - -
Vimu2g03137 275 Pfam Ring finger domain 72 115 IPR001841 -
Vimu2g03137 275 Coils Coil 246 266 - -
Vimu2g03137 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 138 IPR013083 -
Vimu2g03137 275 SMART ring_2 72 114 IPR001841 -
Vimu2g03137 275 ProSiteProfiles Zinc finger RING-type profile. 72 115 IPR001841 -
Vimu2g03137 275 MobiDBLite consensus disorder prediction 230 268 - -
Vimu2g03137 275 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Vimu2g03137 275 MobiDBLite consensus disorder prediction 213 275 - -
Vimu2g03137 275 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 33 275 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03137 28 275 C3H Transcription Factor Family AT5G19430 56.589 2.35e-89 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03137 - - gmx:100785472 386.341