Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03135 ATGAAGCGATCCACAAGGAAGCCTGTGGGAAGGCCCCCAGGGTCCAAGAATAAGTCAAGCTCCAGCACTCAACCAGTGTCCCGAGCTCTGGAGCCCTCCATGAAGGTCTTTTCTTTTAGGGTACCCCCAAACAGGGACATCATGGAGTTCATCTTGAACATTGCTCATAATGGTCATGTCAGTGTGGCCATCATTAGTGCCTCTGGCACAGTCAACAATGTGACCCTTCAAAACTCAACCATGCAGCATGGTCCCTTCACTTTGCTCTCCCTTGCTGGTTCCTACTTATACAACAACCTCTATACCCTTTACCCTGGAGCCAGCCCTCCCTTTCCCCTATCTTTCACCATCAACCTCTCAACCCCTAATGGCCACATATTCGGAGGTGTCATTAGTGGTAGCGTCATTGCCCGTCAAGATGTTAAACTCACCGTCTCGACCTTCAAGAACAGTGGTATCCTCAAGTTTCCTCCAGATCTCGATAACAATCAAAACAATAACATCAACACTACCACCAACAACGACACTGAATGA 534 0.4831 MKRSTRKPVGRPPGSKNKSSSSTQPVSRALEPSMKVFSFRVPPNRDIMEFILNIAHNGHVSVAIISASGTVNNVTLQNSTMQHGPFTLLSLAGSYLYNNLYTLYPGASPPFPLSFTINLSTPNGHIFGGVISGSVIARQDVKLTVSTFKNSGILKFPPDLDNNQNNNINTTTNNDTE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03135 177 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 167 IPR014476 GO:0003680
Vimu2g03135 177 ProSiteProfiles PPC domain profile profile. 31 169 IPR005175 -
Vimu2g03135 177 Gene3D - 33 169 - -
Vimu2g03135 177 MobiDBLite consensus disorder prediction 14 28 - -
Vimu2g03135 177 MobiDBLite consensus disorder prediction 1 28 - -
Vimu2g03135 177 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 149 IPR005175 -
Vimu2g03135 177 CDD DUF296 35 137 IPR005175 -
Vimu2g03135 177 SUPERFAMILY AF0104/ALDC/Ptd012-like 33 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03135 Vimu-Chr2 36283495 36284408 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03135 6 165 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.333 8.81e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03135 - - vun:114188423 289.656