Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03134 ATTCTAAAAAACACAGCTTCAGTTGTGGCTACTACAAGGAGGTTCCCTTCGGATTCCGGTGCCTTTGTCGACTGGTCAGCGTCGCCTTCCGCCGTCTCGGGCCGCGGCGACGACCTCTCTCTCGGCTTCAATGCAACCTCCGCCGCCGCGCACGGCGGCGCATCCATGTGGCCCGGGGCATCGAGGTCATTCAACCACAACCTTTCACCCCACCACGACATCTTCGTGGTGGCTCCCGCGTCGTCGTTCCATCACCACCACCACAGCGACGCTGTTTTGTCCGATCCAAACAACAGTTCCAACGCAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGCCTCACTCCCGAGAGCGAGGGCATAATGGGAAACATCAATAACCACCGCAACAGAATTCAACTATGGCAACCGCAGGAATCACCACAGCACCAACACGCCGACGGCGTCTTGGCGGGTAACCACCGTAGCAGAATTCAGTTATGGGAAGAGCACGACGAGTCCCCCCCGCCGCAGCAGCAGCAACAACAACACCCGAACGCGCACGTGCACGAGCGGGAGGGGAGTGGGAGCGGCGCGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCCACGCACGTGAAGAGCACGTGGGTGCCCGCCGCACGGCGGAGGGAGCGCCAGCTCATGGCGGCGACGGTAGCGGTTGGGTCCAGTGGGTCCACTTCCGCCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCAACACTCCTCCTAGGAGTTTCGACACTGGTTCGAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCAGCAGAGTTCAAGTGTGTTCGTGTCACTGCAGTGGATGATGGAGATGATGAGTATGCATATCAAGCTGTGGTGAAAATAGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAAGATAAATGTGAGTATCCTAATCTATCTGAATTGCATCTGGGTGGTGGTGGAAGTGATGGTGGGGGTAGAAATGGGGTTTCTTCTTCATCTACAATGGTGGATCCTTCTGATGTCTATGCAGCTTCTGCTGGAGTGTTACTGGGAGGTTCAGCAAACTATGGTAATGCAATAAATTAA 1239 0.5585 ILKNTASVVATTRRFPSDSGAFVDWSASPSAVSGRGDDLSLGFNATSAAAHGGASMWPGASRSFNHNLSPHHDIFVVAPASSFHHHHHSDAVLSDPNNSSNATALGVNVFPLLTATPCLTPESEGIMGNINNHRNRIQLWQPQESPQHQHADGVLAGNHRSRIQLWEEHDESPPPQQQQQQHPNAHVHEREGSGSGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATVAVGSSGSTSATKKPRLVPSQTTTTSHTSTSNNTNTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKCEYPNLSELHLGGGGSDGGGRNGVSSSSTMVDPSDVYAASAGVLLGGSANYGNAIN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03134 412 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 82 396 IPR007818 GO:0003700|GO:0006355
Vimu2g03134 412 NCBIfam putative zinc finger domain, LRP1 type 199 241 IPR006510 -
Vimu2g03134 412 Pfam Domain of unknown function (DUF702) 197 354 - -
Vimu2g03134 412 MobiDBLite consensus disorder prediction 169 204 - -
Vimu2g03134 412 NCBIfam LRP1 C-terminal domain 306 353 IPR006511 -
Vimu2g03134 412 MobiDBLite consensus disorder prediction 252 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03134 Vimu-Chr2 36063347 36065267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03134 9 392 C2H2 Transcription Factor Family AT5G12330 48.210 1.05e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu2g03134 DUF702 1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03134 - - gmx:100816514 531.176