Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03127 GATGAATCTGTTTTGATATGGTTCTCTGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACAATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCTTTAATTTCACGTAGTCATCACCGGAAGTGGAAACCTGAGTCAAGAAGTGATGGTATTCCATCTGAAACTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCATTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCCAAAGGACAGTGGGGATCATCTTCGGCTTCATAGCCCATATGAAAGCCCCCCAAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATTTATTATCCTATTCCTCCGATGGGTTTCTTCCCTCCAGATTGTGTGAGTGGTTCACTCCACTCCGTGTCATCCGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTGTGGATGCTTTTAGAGTTAGTCTATCAAGTGCAGTTAGTTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGCTGTACTAGGTGGTGGGTCTCACCAAGTTGGGAGTGATTTTGGTGTGAAAACGGATTCTCTTTTGCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCCTGTGGTGGGAAACATGCGGCCTTAGTTACCAAACAAGGTGAAATTTTTTCCTGGGGAGAAGAATCGGGAGGAAGGCTTGGACATGGAGTTGATTCGGATGTTCCTCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGTACTTACAATTATGGTCTTCTAGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGGGTAAATGGCCATTTGGAGGGAATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGGACATTTGGTGTTCTGGGTCATGGAGACAGAAAAAGTGTTTCCTTGCCCAGAGAAATAGAGTCTTTGAAGGGTCTTCGTACTGTTCAGGCTGCTTGTGGTGTTTGGCATACTGCCGCTATTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTGTCATGTGGTCATAGTATGACTGTTGCACTTTCTCGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACCCAAGCAGATGGGAAGCTACCAACACGTGTAGAAGGAAAGCTGTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTAGCGGTTCTAACTTCAAGGACTGAGGTTTTCACGTGGGGGAAAGGTGCTAATGGTCGATTAGGCCATGGGGATACTAACGACAGAAGCACCCCAACATTGGTAGAAGCTCTGAAAGACAAGCAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACGGCAGCCATATGCCTGCATAAGTGGGTATGTGGGGTTGACCAGTCTATGTGTTCAGGTTGCCGCCAACCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTCAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGAAAAACAACCGATACTGATTCTTCATCTCAGTCCTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGTTCACTTGAGTTTATTGGTAAGGATGACAAATTGGATTCCAGATCTCATAATCAACTTGCTAGGTTTTCTTCAATAGAATCCTTGAAACAAGTGGACAGCAGATCTTCGAAGAAAAACAAAAAATTGGAATTTAACAGTAGCCGTGTCTCACCTGCTCCAAATAGTGGTTCACAGTGGGGAGCAATGAATATTTCAAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAATTTTTTTCAGCCTCTGTTCCTGGGTCTAGGATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCACGTTCAACTACTCCAACGCCAACAATAGGGGGACTTTCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAATCAATGATAACCTGAGTCAGGAGGTTATTAAATTAAGATCGCAGGTGGAAAACCTGACTCGAAAAGCCCAGCTTCAAGAAGTGGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGTTGCCTGTAGGAGTGTCTAGGACTGTCAGATCACCACCCTCTCTTGCTTCCTTTGGCCCAATTCCTGGTTCCAATGACCTTAACAGTGCTCCCTTTGATCGATTGAATATTCAAGCAACGAGCCCAGAATCAGAATTAACTGGATCCAATAACCAGTTACTTTCTAATGGATCAAGCACCATCATCAACAGGAGTGCAGGTCACATAAAACATAGTCAGTCAGATGCTACTAGCACAGGTCACAACAAACATGGTCAATTAGATGCAAGTAGTAGAAATGGAAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCCGAGAATCGTGGAAGGGTATATGAGCAGTATAATGTGCGCACGATTGACAAATCGACAATAGGTGTTGGGAGTGAGGACCTGCCTCATTCATGA 3123 0.4291 DESVLIWFSGKEEKRLKLTNVSRIISGQRTICKDKDEAEVWFSGLKALISRSHHRKWKPESRSDGIPSETNSPRTYTRRSSPLNSPFGSNESLPKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPIPPMGFFPPDCVSGSLHSVSSGGSDSMHGQMKTMPVDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDAVLGGGSHQVGSDFGVKTDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGHLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAIVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALVEPNFCQVSCGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRSTPTLVEALKDKQVKSIACGTNFTAAICLHKWVCGVDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTDTDSSSQSSMSRRGSVNQGSLEFIGKDDKLDSRSHNQLARFSSIESLKQVDSRSSKKNKKLEFNSSRVSPAPNSGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTIGGLSSPKIVVDDAKRINDNLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGVSRTVRSPPSLASFGPIPGSNDLNSAPFDRLNIQATSPESELTGSNNQLLSNGSSTIINRSAGHIKHSQSDATSTGHNKHGQLDASSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRTIDKSTIGVGSEDLPHS 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03127 1040 CDD FYVE_like_SF 587 640 - -
Vimu2g03127 1040 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 582 644 IPR017455 -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 932 957 - -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 711 726 - -
Vimu2g03127 1040 Pfam Regulator of chromosome condensation (RCC1) repeat 527 574 IPR000408 -
Vimu2g03127 1040 Pfam Regulator of chromosome condensation (RCC1) repeat 421 470 IPR000408 -
Vimu2g03127 1040 Pfam Regulator of chromosome condensation (RCC1) repeat 473 522 IPR000408 -
Vimu2g03127 1040 Pfam Regulator of chromosome condensation (RCC1) repeat 302 354 IPR000408 -
Vimu2g03127 1040 Pfam Regulator of chromosome condensation (RCC1) repeat 251 299 IPR000408 -
Vimu2g03127 1040 Pfam Regulator of chromosome condensation (RCC1) repeat 358 406 IPR000408 -
Vimu2g03127 1040 FunFam PH, RCC1 and FYVE domains-containing protein 1 160 411 - -
Vimu2g03127 1040 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 852 - -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 693 726 - -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 251 302 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 360 374 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 234 247 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 253 269 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 303 319 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 521 542 IPR000408 -
Vimu2g03127 1040 PRINTS Chromosome condensation regulator RCC1 signature 463 481 IPR000408 -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 189 250 IPR000408 -
Vimu2g03127 1040 SMART fyve_4 576 645 IPR000306 GO:0046872
Vimu2g03127 1040 Gene3D - 313 411 IPR009091 -
Vimu2g03127 1040 Gene3D - 137 312 IPR009091 -
Vimu2g03127 1040 Gene3D - 412 579 IPR009091 -
Vimu2g03127 1040 FunFam Putative E3 ubiquitin-protein ligase HERC1 584 652 - -
Vimu2g03127 1040 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 646 665 - -
Vimu2g03127 1040 Pfam Unstructured region between BRX_N and BRX domain 881 942 - -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 474 525 IPR000408 -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 53 112 - -
Vimu2g03127 1040 SUPERFAMILY FYVE/PHD zinc finger 579 649 IPR011011 -
Vimu2g03127 1040 SUPERFAMILY RCC1/BLIP-II 189 579 IPR009091 -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Vimu2g03127 1040 Pfam Transcription factor regulating root and shoot growth via Pin3 965 1020 IPR013591 -
Vimu2g03127 1040 ProSiteProfiles BRX domain profile. 966 1021 IPR013591 -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 932 969 - -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 526 577 IPR000408 -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 64 92 - -
Vimu2g03127 1040 Coils Coil 788 864 - -
Vimu2g03127 1040 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 396 406 IPR000408 -
Vimu2g03127 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 656 IPR013083 -
Vimu2g03127 1040 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 344 354 IPR000408 -
Vimu2g03127 1040 Pfam Transcription factor BRX N-terminal domain 839 872 IPR027988 -
Vimu2g03127 1040 Pfam FYVE zinc finger 578 644 IPR000306 GO:0046872
Vimu2g03127 1040 FunFam PH, RCC1 and FYVE domains-containing protein 1 412 583 - -
Vimu2g03127 1040 MobiDBLite consensus disorder prediction 756 783 - -
Vimu2g03127 1040 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 303 357 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03127 Vimu-Chr2 35501198 35511661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03127 848 1030 Major Intrinsic Protein MIP AT1G31880 34.426 1.97e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03127 - - var:108342748 1961.42