Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03116 ATGCAAGTTTGGTGTGTGGAGGGTGCTGGAGTGGAGGGTGATGATGATGAAGAAGAAGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAACAAGAAGATGCTGACTTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCCCATCTAGCAAACGGACAACCGATGTCTGGTCTTGAAAGTGATGAAGAGATAAGGAGAGTGCCGGAGATTGGAGGTGAAAGTGCTGGAACTGCAGCCTCTCGGCGGGAAGCTGGTTCAAATGCTGGTGCAGAACGTGCTCAGGGGACGGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTTAAGAGGCTATTGAGGAACAGAGTTTCGGCCCAACAAGCGAGGGAGAGGAAGAAGGCTTACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAGTATGCTAA 564 0.4663 MQVWCVEGAGVEGDDDEEEDADDLDNEINYGQGNNSKAGMQWEEQEDADFSSSSGHDSQIPNPHLANGQPMSGLESDEEIRRVPEIGGESAGTAASRREAGSNAGAERAQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQVC 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03116 187 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 51 185 IPR044280 GO:0000981|GO:0045944
Vimu2g03116 187 MobiDBLite consensus disorder prediction 28 66 - -
Vimu2g03116 187 MobiDBLite consensus disorder prediction 1 150 - -
Vimu2g03116 187 MobiDBLite consensus disorder prediction 112 150 - -
Vimu2g03116 187 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 132 147 IPR004827 GO:0003700|GO:0006355
Vimu2g03116 187 FunFam Transcription factor HY5 148 187 - -
Vimu2g03116 187 CDD bZIP_HY5-like 130 181 - -
Vimu2g03116 187 Pfam bZIP transcription factor 126 185 IPR004827 GO:0003700|GO:0006355
Vimu2g03116 187 Coils Coil 124 186 - -
Vimu2g03116 187 MobiDBLite consensus disorder prediction 10 26 - -
Vimu2g03116 187 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 127 187 IPR004827 GO:0003700|GO:0006355
Vimu2g03116 187 SMART brlzneu 125 187 IPR004827 GO:0003700|GO:0006355
Vimu2g03116 187 Gene3D Single helix bin 148 187 - -
Vimu2g03116 187 SUPERFAMILY Leucine zipper domain 129 185 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03116 Vimu-Chr2 34898550 34901098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03116 63 186 bZIP Transcription Factor Family AT5G11260 73.600 1.88e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g03116 bZIP_1 3.1e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03116 K16241 - gmx:547806 285.034