Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03113 ATGAAAAAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTTTACAGCTTTGGAGTGGTGCTGCTAGAGCTCATAACAGGGAGAAGACCAGTGGGGAACTTTGGGGAAGATGGATTAGACATTGTTCAATGGATCATGATGCAAACAAATGGGAACAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTACATCACATTCCTTTGACTGAAGCAAAGCAGGTGTTTTTTGTGGCAAAGTTGTGTGTTCATGAACACAGTGTGGAAAGACCAACCATGAGAGAAGTGGTTGAAATGCTTGCACAAGCAAAACAACCAAATACATTTCGAATGCAGTGA 345 0.4087 MKKYAYTLKVDEKSDVYSFGVVLLELITGRRPVGNFGEDGLDIVQWIMMQTNGNKEMVMKILDERLHHIPLTEAKQVFFVAKLCVHEHSVERPTMREVVEMLAQAKQPNTFRMQ 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03113 114 Gene3D Transferase(Phosphotransferase) domain 1 2 113 - -
Vimu2g03113 114 Pfam Protein tyrosine and serine/threonine kinase 9 102 IPR001245 GO:0004672|GO:0006468
Vimu2g03113 114 ProSiteProfiles Protein kinase domain profile. 1 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03113 114 PANTHER OS01G0253100 PROTEIN 3 107 - -
Vimu2g03113 114 SUPERFAMILY Protein kinase-like (PK-like) 5 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03113 Vimu-Chr2 34867508 34869038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03113 3 104 Receptor kinase-like Gene Family AT5G65700 67.647 5.12e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu2g03113 PK_Tyr_Ser-Thr 3.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03113 - - gmx:100815103 202.986