Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03112 ATGGCTACCCTTTCTTCGTTCAGTTTTGTACCCTTTTGCATGCTCTTGTTCCTTGTGTGTCTCACTAGTCCTGCTTGTGTTTCTTCACTTCAACTTTCCTTGAGAAGGCAAGCTTCAATCCTTGTTTCCATGAAGCAAGATTTTGGAGCTGCTAACTCTTCTCTCAGAAGCTGGGACATGTCAAACTACTTGTCCCTTTGCAGTTGGTATGGCATTCAGTGTGACCGTGACAACAGGTCTGTGGTGTCAATTGACATATCAGATTTGAATGTTTCAGGGTCACTTTCACCTGTCATCACAGGACTCTTGAGCCTTGTGAGTGTGTCACTCCAGGGAAATGGCTTCTCTGGGGAGTTTCCAAGTGACATTCACAAGCTACCAAGGCTGAGGTTCCTCAACATGTCTGCAAACGTGTTCAGTGGGAATTTGAGTTGGAAATTCTCCCAGCTAAAGGAGCTCGAAGTGGTTGATGCTTATGACAATGCTTTCAATGGGTCACTTCCTCTGGGTGTCACTTATCTCCCAAAGATCAAGCACTTGAACTTTGGAGGGAACTACTTCTCTGGGGAAATCCCTCCAAGCTATGGAAACATGTGGCAGCTCAAGTATCTGTCCCTTGCAGGGAATGATTTGAGAGGATTCATACCAAGTGAGCTTGGGAATCTCACCAACTTGACTCATCTTTTCTTGGGATACTATAATCAGTTTGATGGTGGAATTTCTCCAGAGTTTGGTAAGCTCACCAATTTGGTTCATCTAGACATTGCAAATTGTAGCTTGACAGGTCCAATTCCTGTTGAGTTGGGAAACCTGAAAAAGTTAGACACTCTCTTCTTGCAAACAAATCAGCTGAGTGGTTCAATCCCTCCCCAGCTGGGAAACTTGACTAGATTAAAAGCTCTTGATCTATCATTCAACATGCTCACAGGAGGCATCCCTGATGAGTTCTCAGCCCTTCAAGAGCTTACCCTCTTGAACTTGTTCATAAACAAGCTGCATGGAGAAATTCCTCACTTCATTTCTGAGCTACCAAACTTGGAGACTCTCAAGCTTTGGCAGAACAACTTCACTGGAGTGATTCCTTCAAATCTTGGACAGAATGGCAGGTTGGTTGAGCTTGATTTGTCAACAAATAAGCTCACTGGTTTGGTGCCAAAATCTCTGTGTCTTGGAAAGAGGCTGAAAATTTTGATCCTGCTCAAGAACTTTCTGTTTGGATCTTTGCCTGAGGATCTTGGTCAATGCCACACACTCCAAAGAGTCCGTTTGGGTCAGAACTACTTAACCGGGCCATTGCCACATGGGTTTCTCTATTTGCCTGAACTTTTACTTGTGGAGCTTCAGAACAATTATCTTAGTGGTGGCTTACCACAATCAACAAGCAGCACACCTTCCAAACTAGCACAGTTGAACCTATCAAACAACCGCTTCTCAGGGTTTCTTCCAGCCTCAATTTCAAATTTTCCAAACTTGCAAATTCTTCTGCTTAGTGAAAACAGATTCTCTGGAGAAATTCCACCAGTTATAGGGAGGTTGAAAAGCATCCTCAAGTTTGATATAAGTATCAATAACTTTTCAGGTACTATTCCACCCGAGCTAGGTAATTGTGTCTTACTCACCTATTTAGATTTCAGCCAAAACCAGCTATCAGGTCCCATTCCTGTTCAAATTGCTCAAATCCACATATTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGCCTTCCCAAGGAACTTAGGACCATGAAGGGCTTAACTACAGCAGATTTCTCTCACAACAACTTCTCAGGTTCAATACCCGAGGGGGGGCAATTCTCAATCTTTAATTCTACATCCTTTGTGGGTAATCCTCATCTATGTGGTTATGACTCCAAGCCATGCAACCTTTCTTCAACATCTACATTGGAGTCTCAAGAAAAAAAGAGTGCAAAAGATGGGGTCCCCGGGAAGTTCAAGTTCCTTTTTGCATTGGCATTGTTGGGGTGCTCATTGGTGTTTGCAACCTTGGCCATAATCAAGAGTAGAAAGACTAGGAGGCACTCCAATTCATGGAAGTTAACAGCATTCCAGAAGCTGGAGTATGGGAGTGAGGACATCATAGGGTGCATAAAGGAAAGCAATGTAATAGGAAGAGGAGGATCTGGGGTTGTGTACAGAGGAACCATGCCAAATGGAGAGGAAGTGGCAGTGAAGAAGCTCTTAGGAATCAACAAAGGATCTTCTCATGACAATGGCCTCTCTGCAGAGATAAGAACATTAGGGAGAATCAGACATAGGTACATTGTGAGGTTGTTAGCATTTTGCTCAAACAGAGAGACCAATTTGCTTGTCTATGATTACATGCCAAATGGAAGCTTGGGGGAAATGTTGCATGGAAAAAGAGGTGAGTTTCTCAAGTGGGACACTAGGCTCAAAATAGCTATAGAAGCTGCAAAAGGACTTTGTTATCTGCACCATGATTGTTCCCCTTTGATAATCCATAGAGATGTCAAGTCAAACAACATACTCCTCAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCATGCAAGATAATGGTGCATCAGAGTGCATGTCTTCCATTGCTGGTTCCTATGGCTATATTGCTCCAGGTACTTTAAATATTCAACTACATATAATTGGAGAATCATGA 2673 0.4291 MATLSSFSFVPFCMLLFLVCLTSPACVSSLQLSLRRQASILVSMKQDFGAANSSLRSWDMSNYLSLCSWYGIQCDRDNRSVVSIDISDLNVSGSLSPVITGLLSLVSVSLQGNGFSGEFPSDIHKLPRLRFLNMSANVFSGNLSWKFSQLKELEVVDAYDNAFNGSLPLGVTYLPKIKHLNFGGNYFSGEIPPSYGNMWQLKYLSLAGNDLRGFIPSELGNLTNLTHLFLGYYNQFDGGISPEFGKLTNLVHLDIANCSLTGPIPVELGNLKKLDTLFLQTNQLSGSIPPQLGNLTRLKALDLSFNMLTGGIPDEFSALQELTLLNLFINKLHGEIPHFISELPNLETLKLWQNNFTGVIPSNLGQNGRLVELDLSTNKLTGLVPKSLCLGKRLKILILLKNFLFGSLPEDLGQCHTLQRVRLGQNYLTGPLPHGFLYLPELLLVELQNNYLSGGLPQSTSSTPSKLAQLNLSNNRFSGFLPASISNFPNLQILLLSENRFSGEIPPVIGRLKSILKFDISINNFSGTIPPELGNCVLLTYLDFSQNQLSGPIPVQIAQIHILNYLNVSWNHLNQSLPKELRTMKGLTTADFSHNNFSGSIPEGGQFSIFNSTSFVGNPHLCGYDSKPCNLSSTSTLESQEKKSAKDGVPGKFKFLFALALLGCSLVFATLAIIKSRKTRRHSNSWKLTAFQKLEYGSEDIIGCIKESNVIGRGGSGVVYRGTMPNGEEVAVKKLLGINKGSSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYDYMPNGSLGEMLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPGTLNIQLHIIGES 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03112 890 SMART LRR_typ_2 343 367 IPR003591 -
Vimu2g03112 890 SMART LRR_typ_2 488 512 IPR003591 -
Vimu2g03112 890 SMART LRR_typ_2 271 294 IPR003591 -
Vimu2g03112 890 SMART LRR_typ_2 295 319 IPR003591 -
Vimu2g03112 890 SMART LRR_typ_2 368 390 IPR003591 -
Vimu2g03112 890 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 674 782 - -
Vimu2g03112 890 FunFam Uncharacterized protein 34 191 - -
Vimu2g03112 890 Gene3D Ribonuclease Inhibitor 234 334 IPR032675 -
Vimu2g03112 890 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 347 633 - -
Vimu2g03112 890 Pfam Protein kinase domain 707 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03112 890 Gene3D Ribonuclease Inhibitor 335 637 IPR032675 -
Vimu2g03112 890 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 880 - -
Vimu2g03112 890 Pfam Leucine Rich Repeat 249 271 IPR001611 GO:0005515
Vimu2g03112 890 Pfam Leucine Rich Repeat 467 488 IPR001611 GO:0005515
Vimu2g03112 890 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515
Vimu2g03112 890 Gene3D Ribonuclease Inhibitor 191 233 IPR032675 -
Vimu2g03112 890 Gene3D Transferase(Phosphotransferase) domain 1 783 884 - -
Vimu2g03112 890 SMART serkin_6 705 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03112 890 Gene3D Phosphorylase Kinase; domain 1 674 782 - -
Vimu2g03112 890 ProSitePatterns Protein kinases ATP-binding region signature. 711 734 IPR017441 GO:0005524
Vimu2g03112 890 FunFam Protein kinase superfamily protein 783 855 - -
Vimu2g03112 890 SUPERFAMILY L domain-like 311 638 - -
Vimu2g03112 890 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vimu2g03112 890 ProSiteProfiles Protein kinase domain profile. 705 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03112 890 SUPERFAMILY L domain-like 62 385 - -
Vimu2g03112 890 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
Vimu2g03112 890 SUPERFAMILY Protein kinase-like (PK-like) 699 882 IPR011009 -
Vimu2g03112 890 FunFam Receptor-like protein kinase 2 192 290 - -
Vimu2g03112 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03112 Vimu-Chr2 34864688 34867360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03112 41 877 Receptor kinase-like Gene Family AT5G65700 55.806 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu2g03112 Pkinase 1.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03112 - - gmx:100803075 1582.77