Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03111 ATGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGCTCCACCGCGGACGACCGCGAAGACTTCGACGAAGCCGCAACAGACGGCAGGACGTTCGATGACCTCGGCCTGGCGGAGTGGGTGGTTAGTACGTGCAGGGAGCTCGGAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTGTGCTAGAGGGCCGACAAGTGTTTGGCATCGACGAGACTGGGAGTGGGAAAATGGCGGCCTTCGCTCTTCTAATCCTGCATCGACTCGCTGAGCACACCTTCGGCGTTTTCGCACTCGTAGTGACGCCCACGCGCAAACTTGCGTTCCAGCTCGCGGAGCAATTCAACGCTCTAGGCTCAACCATGCACCTCCGCATCACGGTTGTGATAGGTGGCAAGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGACATTGCCACACCTGGGAGAATCCACGTCTTGCGCCGTGATACCCTGATATTTCTCCTGTTTTCTTGA 522 0.5747 MLPVPQTQESHQRSTADDREDFDEAATDGRTFDDLGLAEWVVSTCRELGMRMPRHVQQRCIPPVLEGRQVFGIDETGSGKMAAFALLILHRLAEHTFGVFALVVTPTRKLAFQLAEQFNALGSTMHLRITVVIGGKDMLKQAKDLVARPHLDIATPGRIHVLRRDTLIFLLFS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03111 173 Gene3D - 4 171 IPR027417 -
Vimu2g03111 173 Pfam DEAD/DEAH box helicase 55 161 IPR011545 GO:0003676|GO:0005524
Vimu2g03111 173 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 19 160 - -
Vimu2g03111 173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 173 IPR014001 -
Vimu2g03111 173 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 30 58 IPR014014 GO:0003724
Vimu2g03111 173 MobiDBLite consensus disorder prediction 1 24 - -
Vimu2g03111 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 166 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03111 Vimu-Chr2 34839880 34840401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03111 17 167 Eukaryotic Initiation Factors Gene Family AT3G19760 31.410 1.40e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03111 K14778 - var:108345186 242.276