Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03110 ATGGCGAGTTTGATCCTCAGAAGATCCTCCTCTGTAATCTCGCGCCGCTTCTTCGCCACTCTCGCCACCGTCGAACCGATTCCGCGCCACAGCGGGCTCGCCGCCGTCCGGCACGGTGGCTCCAACGACGGAGTTGGAATCAGATCCTTGCATGCGATATCCGGACCGTTGAACTTCCGCTCGTCGCCGGTTTCTCGCACTGCGCAGCTCGCCGTGGAACGCGACTACTCCAACGAAGAGGTAGGTTCCGGCACGAACTGCGACGAAGGACTCGAGCTCGCGAAGCTCGGGATCTCGACGGAGATCGTGGATGCCTTGGCCAAGAAAGGGATCGCAAAGCTGTTTCCTATCCAGAGAGCTGTGCTGGAACCTGCAATGCAGGGACGTGATATGATTGGTCGAGCTAGGACAGGAACTGGAAAAACTCTTGCATTTGGGATACCCATCTTAGACAGGATCATTCAGCTGAATGCTAAACATGGGCGAGGAAAAGATCCTTTGGCTATGGTTTTGGCTCCTACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACCTGGACACGATCTGTCTTTATGGGGGTATGCCCATCCAACAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGTAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAATAGGAGGGCACTGAATTTAAAGGATGTGAAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAACATCTTGGAGAATTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAGTATTACCCGCAATTACTTAAACAACCCCCTTACCATTGATCTCGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGCGTCTGATGTGCGCACTAAAGCAGGAATTCTTGCACCCCTGATAACAGAACATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATAGATTATCATATGTTATGGCTAAAAGCCTTAAATGTGAGGCTTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGGACTCTTGCTGGTTTCAGAAACAACCATTTCAATGTTTTAGTGGCAACGGATGTTGCATCACGGGGCCTTGATGTTCCAAATGTAGATCTCGTGATACATTATGATCTTCCCAGTTCATCAGAGATATTTGTTCACAGATCTGGACGAACAGGCCGTGCTGGGAAGAAAGGAGCTGCTATTCTTATTTACTCAGAAGATCAATTCAGGACTGTAAAGACTATTGAGCGTGATGTTGGATGCAAATTTACTGAGTCCCTAACAATAGCCTATTCTCTTTCCATAGATCCTATCCAGTTCACTCTAAAGGGCATTGGAATGTGGTACCTCTCTAAGTTAGGGAGCTCTGTGGTGAATATCTTCCTAGTTTGTGACTGA 1503 0.4657 MASLILRRSSSVISRRFFATLATVEPIPRHSGLAAVRHGGSNDGVGIRSLHAISGPLNFRSSPVSRTAQLAVERDYSNEEVGSGTNCDEGLELAKLGISTEIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQLNAKHGRGKDPLAMVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPIQQQMRQLNYGVDIVVGTPGRIIDLLNRRALNLKDVKFVVLDEADQMLQVGFQEAVENILENLSPNRQTLMFSATMPSWIKSITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDVRTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLKCEALHGDISQTQRERTLAGFRNNHFNVLVATDVASRGLDVPNVDLVIHYDLPSSSEIFVHRSGRTGRAGKKGAAILIYSEDQFRTVKTIERDVGCKFTESLTIAYSLSIDPIQFTLKGIGMWYLSKLGSSVVNIFLVCD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03110 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Vimu2g03110 500 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 457 - -
Vimu2g03110 500 SMART helicmild6 350 430 IPR001650 -
Vimu2g03110 500 Gene3D - 314 475 IPR027417 -
Vimu2g03110 500 Pfam DEAD/DEAH box helicase 115 283 IPR011545 GO:0003676|GO:0005524
Vimu2g03110 500 Pfam Helicase conserved C-terminal domain 325 430 IPR001650 -
Vimu2g03110 500 SMART ultradead3 110 313 IPR014001 -
Vimu2g03110 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 481 IPR001650 -
Vimu2g03110 500 FunFam ATP-dependent RNA helicase RhlE 80 299 - -
Vimu2g03110 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 451 IPR027417 -
Vimu2g03110 500 CDD SF2_C_DEAD 322 439 - -
Vimu2g03110 500 Gene3D - 63 299 IPR027417 -
Vimu2g03110 500 CDD DEADc 102 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03110 Vimu-Chr2 34764640 34770451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03110 96 460 Eukaryotic Initiation Factors Gene Family AT3G19760 32.791 1.73e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03110 - - gmx:100802553 753.051