Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03088 ATGGACCATATGAATACATCCTTGGATGATATAGAATTAGATGAAGAACATGACGAAGCTGTTGAAGAATTAAATGACAACCATGTTCAACCTAACTCAATCCTCCCAACAGTTGGAATGGTTTTTGAAAGTGTTAACCAAGCCAAGTCATTTTATAGACAATATGCAATATCAAAGGGGCTGGAAAATGTCCCCTTGAATCATAATGAAAAGATTGGACGTCCAACACTGGCTAATGATTGTGCAGCTAGGATGATTGTATCAAAAAGAGATGACAAGTGGTACATTTCAGCATTTGATGACGTACATAGTCATGATCTTAGTCCAACAAAGTCAAGGTTGTTTAGAGGCAATAAAAGGATGAATCTGAATGTCAAAAGAATACTAGACTTAAATGCTAAAGCAGGAGTTAGGATGAACAAGAGTTATCGATCCTTGGTTTGTGCTACAGGAGGTTATGAGCACATGGAGTTTGTCGAACAAGATGCAAGAAATTATGTCGCCGAACAAAAAAGAGCATTATCAAAAGATGGTGATGCCAAGGCACTCTTAAACCATTTCTCTTCCATGAGAGAAATGAATAAGGATTTTTTTTCCGACATTGATGTTGATGACGACAACCGCATACTTAATGTGTTTTGGGGTGATGCACGAAGTAGGGCAGCTTGTGAGTATTTTGGTGATGTCATATCTTTTGACACAACATACTTAACCAATAAGTATGAGATGTCGTTTGCTCCTTTTGTTGGTGTCAACCACCACGGCCAATCAATATTGTTAGGGTGTGGTTTGTTATGCTCAGAGGACACAGATTCATTTGTTTGGCTATTTAATTCATGGCTTCGTTGCATGTCCAATAGAGCACCCCAAGGAATTATTACAGATCAATGCAAAGCAATGAAGAAAGCAATTGAACTCGTGTTTCCTAACACTCGTCATAGATGGTGCTTGTGGCATATAATGAAAAAAATACCTGAGAAGTTACAAGGGTATGCCGATTACAAAGATATCAAAAGAGAACTTAAGCAAGTTGTGTACAATTCTAATTCGGTTCACAGTTTTGTTTACGGGTGGGAAAGGATGATAACAATATTTTCACTACAAACAAATGAATGGTTGTCTTCACTTTATGAAGAACGAAGCAGGTGGGTTCCTTGTTACCTGAGAAACACTTTTTGGGCTGACATGTCAACAACTCAAAGAAGCGAGAAATTTGTTAAACAATATGACAATGCACTACAACAGAAGATAGAGAAAGAAATCCAAGCTGACTTCACCTCGTTAAACACAACTCTTCCATACGGGTCACAATCACTCATAGAGAGACAGTTCCAAAAGCATTACACACATGCTAAGTTTGCTGAGATACAGTCCGAATTTAGAGGTAAAATTAATTGTTTTGTTGATGGTGTTGTTGTTCAGGATAACTCATCACTTTACAGAGTAACAGAGGACTCCATTCATAACGATTCAAGGGAAGAGAGGCGAGTAACAGAGCTCCCTTCTAAGTACATACTCACAAGATGGTGTAAAAATGTCCGCAGAAAGCACACGTATATTAGAGCTACACACAGCAACAGAGAAAAGGATCCTCATATTCAACGGTATGATCACTTATGCAAGACTTTTGGAGATATTGCTGAGATTGCATGTGAGTCAATAAGCATGACAGAATTATTGCTTCACAACCTTAAATCATTTGTGAACGACCATGGCCTACAAATTACACCTTCACCAAACCTCAACAACAATACTAACCAACAACGAGACGACTTGCATGACAATAACATAGGTGATGATGTACACACAAATACAAACAATGTTAGCATCGAAAGCCCTAAAGTTGTCAAGCGGAAGGGTCGACCAAGGACAAAGAGGTTGAAATCCACATGTGAAAGACTAACAAGGAAGACAAAATCAAAAAAACAAACTACTCGATCATCTTTTCCTATTGCTGACACAATGATGGATGGACCAAATGCAACAATAACCAATAACATTGATGGGACACTAGACACATATTACACAAGAGCCAACTCAATTGAACCGGTATCAAGTGTGCAATCCCCTGGGTTCATGTCACTGCTTGCATCGTTACACAACGAGGTGCAAAACACGCAATCAACTGCTGATGACTTGAATTCTATGTGGTTAGTTGTGGACTGCGTTTTGTATAAGGTGAAAAATGTTGATTTCAATCCTACTTACCACATATCACTTGTTCCAGTAACTGGTTATATCCTCATCTTTATGCGGTTATATTGGAAATCTGTTTTGTACAACAATAAATTTGTTGAAATCAATCCCAATTACCACACATCTGTTGGCAAAGAAAGGTCTGATGAGTTGCAGAACTTGGGGGATGTCGAAGTCTTTAGCTTTTCCATGCAGCGGATGCGATGTATGCATTTTTGCCACACAGCAATCTGA 2430 0.3856 MDHMNTSLDDIELDEEHDEAVEELNDNHVQPNSILPTVGMVFESVNQAKSFYRQYAISKGLENVPLNHNEKIGRPTLANDCAARMIVSKRDDKWYISAFDDVHSHDLSPTKSRLFRGNKRMNLNVKRILDLNAKAGVRMNKSYRSLVCATGGYEHMEFVEQDARNYVAEQKRALSKDGDAKALLNHFSSMREMNKDFFSDIDVDDDNRILNVFWGDARSRAACEYFGDVISFDTTYLTNKYEMSFAPFVGVNHHGQSILLGCGLLCSEDTDSFVWLFNSWLRCMSNRAPQGIITDQCKAMKKAIELVFPNTRHRWCLWHIMKKIPEKLQGYADYKDIKRELKQVVYNSNSVHSFVYGWERMITIFSLQTNEWLSSLYEERSRWVPCYLRNTFWADMSTTQRSEKFVKQYDNALQQKIEKEIQADFTSLNTTLPYGSQSLIERQFQKHYTHAKFAEIQSEFRGKINCFVDGVVVQDNSSLYRVTEDSIHNDSREERRVTELPSKYILTRWCKNVRRKHTYIRATHSNREKDPHIQRYDHLCKTFGDIAEIACESISMTELLLHNLKSFVNDHGLQITPSPNLNNNTNQQRDDLHDNNIGDDVHTNTNNVSIESPKVVKRKGRPRTKRLKSTCERLTRKTKSKKQTTRSSFPIADTMMDGPNATITNNIDGTLDTYYTRANSIEPVSSVQSPGFMSLLASLHNEVQNTQSTADDLNSMWLVVDCVLYKVKNVDFNPTYHISLVPVTGYILIFMRLYWKSVLYNNKFVEINPNYHTSVGKERSDELQNLGDVEVFSFSMQRMRCMHFCHTAI 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03088 809 MobiDBLite consensus disorder prediction 576 655 - -
Vimu2g03088 809 MobiDBLite consensus disorder prediction 576 591 - -
Vimu2g03088 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 569 IPR031052 GO:0006355
Vimu2g03088 809 Coils Coil 696 716 - -
Vimu2g03088 809 Pfam MULE transposase domain 229 323 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03088 Vimu-Chr2 34229103 34233045 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu2g03088 MULE 8e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03088 - - var:108332824 1107.43