Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03086 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGCATCACCAACAATGAAAAGAAGCCTATGGGGGTGGACCAAGAACTTGTGGAGCTTCTGTGGCAAAATGGTCAGGTAGTGTTGCACAGCCAAACACATAGAAAACCAGGTGTGAATTCGATCACACCGAGACCTCTTCAGAGGGCTTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTATTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAAATGCCACAGTGTGATGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGCAAAGTTTACCAAATTGGATGCTTCTGGTGCCCCCCATGTGCTTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCATGAACTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGTGGACCATGTAAGGTCCAAAACTTCTCTCACTTTTCACCTACCCTTAATGTTTCTTCAGCATTGCCTAATGGGCGTTTTAGAGACAAAATCACTGGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATAACATGACCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGATCCTGAAGCTGTCAGAGATGATGTGCCAAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAACTGCTACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTAGGAAAAACTTGTTCCTTATCCACCAGAAACCAGAGCCAAAAAAGAAAAACAATAGACGTGGAAGAATCTGAGGATCATAGTGAGGACACAGAACTTAAATCACCAGTTGGCAACAAGACATCTCAACGGACAGGGTCGGCAAGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATAGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCGATGATGTTTCCAGGAATTCAACACTATATGTCTCAAATGGGTATGGGAATGGCTACTTCTCCTTTCCCTCCCATTCAAAATCCAATGCAATTACCACGAGTACCTCTTGATCATCCTGTATCTTCATCTCAGACACCAAACCAGACATTGATGTGTCAAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCATATCAATGTATTTAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGACTGTGAGTGGCAAAATGGGTAAGCCATTTGCATAG 1653 0.418 MNNSVPDWNFGSDSCITNNEKKPMGVDQELVELLWQNGQVVLHSQTHRKPGVNSITPRPLQRAFQSTLRTSEPFGNSSNLIQDDETVSWIQYPIEDPLEQEFCSNLLSEMPQCDVESYKQIKPFEEAKFTKLDASGAPHVLVSSQSPTMKSSSFHELSGIPIPAPRFHVSDSPQKNNNDLGGGPCKVQNFSHFSPTLNVSSALPNGRFRDKITGNMSKNEVRECSLMTVGSSYCGSNNMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEMLEPTATSSSGGSGSSLGKTCSLSTRNQSQKRKTIDVEESEDHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDHPVSSSQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQHINVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDETVSGKMGKPFA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03086 550 MobiDBLite consensus disorder prediction 283 312 - -
Vimu2g03086 550 SMART finulus 356 405 IPR011598 GO:0046983
Vimu2g03086 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 428 IPR036638 GO:0046983
Vimu2g03086 550 MobiDBLite consensus disorder prediction 523 537 - -
Vimu2g03086 550 MobiDBLite consensus disorder prediction 259 355 - -
Vimu2g03086 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Vimu2g03086 550 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Vimu2g03086 550 MobiDBLite consensus disorder prediction 333 347 - -
Vimu2g03086 550 MobiDBLite consensus disorder prediction 313 332 - -
Vimu2g03086 550 FunFam Basic helix-loop-helix transcription factor 345 408 - -
Vimu2g03086 550 MobiDBLite consensus disorder prediction 523 550 - -
Vimu2g03086 550 CDD bHLH_AtPIF_like 350 413 IPR047265 -
Vimu2g03086 550 Gene3D - 345 406 IPR036638 GO:0046983
Vimu2g03086 550 PANTHER TRANSCRIPTION FACTOR PIF3 21 502 IPR044273 GO:0003700|GO:0006355
Vimu2g03086 550 Coils Coil 356 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03086 Vimu-Chr2 34157534 34160039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03086 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 38.889 3.31e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu2g03086 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03086 K16189 - gmx:100784531 927.932