Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03081 ATGAACAATTCCAAGAAAACGGGTGTACGGAAATACCAAAAATCGGAAAATCCACGTCTGCGATGGACACCTGAACTCCATGAATACTTTGTAGAAGTTGTGGAAGGTCTTGGTGGAAAAAACAGTGAGTTTTTCCTTCTTCAACTTGATCTAGGCAAATTGGATTTTGCAGAGGCAACTCCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTAAGAATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACCTGAAGGGGCATACGATTCTCTCATCAATGCATCAGGAGATGGAAGGGAATGAAGATGATAAAGATCTTCCAATCAAGCAGCTGCCACCCAAGCACACAGCAGATTTGAAGACACATACAGCTCATTGCCACGACCCAGTAATTAGGTCAGAGGTATGTCAGGCTTGGGCAATTAATTTGGAGGTGCTTGAAGAGACAAGTGCTGATCCAGCCTTCAAAGGGGAAGCATCACGGCCCACACATGGCACGTCCAGCGTGAGGAGAACTCCATGTTGGCAGCAAAAGGAGCAGTTCATCAAAAAGAAAGCAGCAACACGCGTTTGGGGCCTTCACGGTTGCGGTCCAACAATAGCATACAACACACGCACATCCAACAGCTTGGGAAGTAAGTCCAACTGCAGCCCGAGAATGAAGAGAGAGATTAAAGCAATAATGGAAGAAGAAGTGAAAAGCCATGAAGATGGAGCTCAAAAGGGGTCAAAAAGGCATCAAGAAGGAAGAAAACCCGAAGCCCAGGCGACAGAAACGCAAAAACAGCGAGCTGAAAATAACGTCGCCCGGGCGACGGATCCGACGCCCAGGCGACGGACGCTCGAAGCTTGGGCAAGCCTTGATTCACACTTGGGCGAGCTCCCTGCGACGCTTGAGCGTGATTTGACGTGGATCGGGCCTTGTTTCTGCTCTGATTTGATTCTTTTGGACCCTGGGGCTCTAGTTCAGGTCCTTGTTGAATTACTCCTAAGGGTTATATTGCTCAGGGATGAGGGTTTAAGTGTCTTCATGAGGGACGTTGGCATTAATGACGCCGAGAGTCCTCTGGGATACGATACTTGGTCTTACCATTTTATATTACTTGTGCGACTCGGTACACTTGCCGATTTGCCACAACACTTGGAGAGAATGGAGTGGCAACCAACATCAAGGTCCAGCCTTCACGCAGGTGCAGCAGCGGTCCAACATCCAGAAGAAGGAAGGAGCCTTCACTTTAAGGGCATCTTTCATTTAGGAGGGGAAGGACGTCCACAATGGAGGGCTATGGATAGGAGAAGCAGCAGCCGCCACTTGTTTTTGTATTTTATTATTGCAGCTTTATGCACTTGGATGATTTACTTGCTGGAGGAAAGAGGAAGCGGTGGTGCACTTTTTATTTGA 1413 0.4756 MNNSKKTGVRKYQKSENPRLRWTPELHEYFVEVVEGLGGKNSEFFLLQLDLGKLDFAEATPKSILQMMHVKGLRISHIKSHLQMYRNLKGHTILSSMHQEMEGNEDDKDLPIKQLPPKHTADLKTHTAHCHDPVIRSEVCQAWAINLEVLEETSADPAFKGEASRPTHGTSSVRRTPCWQQKEQFIKKKAATRVWGLHGCGPTIAYNTRTSNSLGSKSNCSPRMKREIKAIMEEEVKSHEDGAQKGSKRHQEGRKPEAQATETQKQRAENNVARATDPTPRRRTLEAWASLDSHLGELPATLERDLTWIGPCFCSDLILLDPGALVQVLVELLLRVILLRDEGLSVFMRDVGINDAESPLGYDTWSYHFILLVRLGTLADLPQHLERMEWQPTSRSSLHAGAAAVQHPEEGRSLHFKGIFHLGGEGRPQWRAMDRRSSSRHLFLYFIIAALCTWMIYLLEERGSGGALFI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03081 470 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 87 IPR006447 GO:0003677
Vimu2g03081 470 MobiDBLite consensus disorder prediction 234 280 - -
Vimu2g03081 470 SUPERFAMILY Homeodomain-like 16 87 IPR009057 -
Vimu2g03081 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 211 IPR046955 GO:0003700
Vimu2g03081 470 Gene3D - 17 89 - -
Vimu2g03081 470 MobiDBLite consensus disorder prediction 157 176 - -
Vimu2g03081 470 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03081 Vimu-Chr2 33523238 33531009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03081 8 86 G2-like Transcription Factor Family AT1G14600 53.165 1.27e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g03081 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03081 - - vum:124839400 182.185