Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03061 ATGGTAACCATCAAAGCTTCTTACACAGTAGTTCCAAATCAACCAACTCCAGAGGGTTATCAATGGCTGTCTGATCCTGATCAAGTGGCACGTCAGAGCCACACCCCCACCATCTATGTTTACCATGCAAAGCACAACCATAACGCATTAGTTGAACACATAAGAAACTCTCTTAGCAAGATTTTGTTTTACTACTATCCAGTAGCTGGTAGATTGAGAAAGTTAGAAGAAGATGGCAGGTTGGAATTGAATTGTAACGCAAAAGGAGCGGTGTTGATTGAAGCAGAATCCACAAAAGCAGTGCATGATTATGGTGACTTTATGAATGAGTCCGCCAAGGACTTGGTTCCAACAGTTGATTACACAAACACCCCAATTGAGGAACTTCCCTTGTTAGTAGTGCAAGTAACGAGTTTCCTTGGCGATGAAGCTTTTTCCATTGGAGTTGCTATATCTCATACTTTGACTGATGGTGCTGCTGCCATTCAGTTCATCAACTCATGGGCAAAGTTGGCTCGTGGACACACATTAGAGCCTCATGAAATGCCCTTTCTGGATCGAACTGTGCTAAAATTCACAGCTCCTCCATCACCCCCACGCTTTGATCACCAAGAATTCAAGCCTTTGCCTCTCATATTAGGACGAAGTGACACCACTCTTGAGAAAAGCAAGAGGGTAAGTGCCATGACGTTGAAGCTGACAGCAGAACAAGTGGGGAAGTTGAAGAACAAGGCCAATGCTGATAAATCAACAGAAGGGTCAAGACCTTATAGCAGATTTGAGGCCATTGGTGCACATGTATGGAGATGTGCATCTAAGGCTCGTGGATTAGATGAGAATCAACCAACTCTGCTTCGGTTCAATGCTGATATTCGCAATAGAGTAATTCCACCTCTCCCTAGGAATTACTTTGGGAATGCTTTGGTCTTAAAAACTGCATCATCGCGCGCTGGAGAAATCTTATCAACTTCTTTGGGTCATGCAGCTCAGAAAATAAGAGAAGCAGTTGAAGAACTTACATACGAGTATATAAAATCACAGGACCGTCTTATACCTCAAGCAGTTAAAGGAGCGTTTCCACACGGTGTCCAAAGATGCAGATTGGGCGTTCCTCAACTGAAGCAGAACACAAAGCCTCTCTACTTCATCCTCAATAATTTTTTTTTTCAGTTTGACCTTATTAGAAGTCAAGACGATATGGATAAAGCAAGGGCTTTGTCCTTTGGAATAAATGAAGGTAAAGATGCAGTGTTTGTTGGGAATCCTAACCTTCGTATTACAAGTTGGCTGAGTATGCCAATGCATGGAGCAGATTTTGGGTGGGGAAAGCCTGTGTATTTTGGTCTAGCAGGTGGGACTGTACAGGAGAGGGCACTGATTACCCACGATCCAGATGGTGATGGCTCTATTATTCTGTTTCTACACTTTCAAATGGAACATATTCAGCTTTTCAAGAACTATTTCTATACTGATATATAA 1479 0.4253 MVTIKASYTVVPNQPTPEGYQWLSDPDQVARQSHTPTIYVYHAKHNHNALVEHIRNSLSKILFYYYPVAGRLRKLEEDGRLELNCNAKGAVLIEAESTKAVHDYGDFMNESAKDLVPTVDYTNTPIEELPLLVVQVTSFLGDEAFSIGVAISHTLTDGAAAIQFINSWAKLARGHTLEPHEMPFLDRTVLKFTAPPSPPRFDHQEFKPLPLILGRSDTTLEKSKRVSAMTLKLTAEQVGKLKNKANADKSTEGSRPYSRFEAIGAHVWRCASKARGLDENQPTLLRFNADIRNRVIPPLPRNYFGNALVLKTASSRAGEILSTSLGHAAQKIREAVEELTYEYIKSQDRLIPQAVKGAFPHGVQRCRLGVPQLKQNTKPLYFILNNFFFQFDLIRSQDDMDKARALSFGINEGKDAVFVGNPNLRITSWLSMPMHGADFGWGKPVYFGLAGGTVQERALITHDPDGDGSIILFLHFQMEHIQLFKNYFYTDI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03061 492 Gene3D - 389 490 IPR023213 -
Vimu2g03061 492 Gene3D - 215 368 IPR023213 -
Vimu2g03061 492 Pfam Transferase family 422 489 - -
Vimu2g03061 492 Pfam Transferase family 1 346 - -
Vimu2g03061 492 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 485 - -
Vimu2g03061 492 Gene3D - 1 208 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03061 Vimu-Chr2 32617835 32621966 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03061 2 489 Monolignol Biosynthesis Gene Families AT5G48930 32.245 1.15e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03061 K13065 - gmx:100778626 666.381