Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03056 ATGGTAACCATCAAAGCTTCTTACACAGTAGTTCCGAATCAACCAACTCCAGAAGGTATCCAATGGCTCTCTGATATCGATCAAGTGGCGCGTCTGTGCCATACACAGACCATCTACGTTTTCCATGCAAAGCACAACCATGACGCATTAGTTGAACAGATGAGAAACTCTCTTAGCAAGATTTTGTCGCATTACTATCCTATTGCTGGTAGATTGAGAAGGTTAGAAGAAGGTGGCAGATGGGAATTGAATTGTAATGCAAAAGGAGCGGTGTTGATTGAAGCAGAATCCACAAAAACAGTGAACTATTATGGTGACTTTTTGGGTGAATCCGCCAATGACTTGGTTCCAACAGTCAATTACACAAACACCTTCATCGAGGAACTTCCCTTGTTACTAGTGCAAGTAACAAGCTTCCTTGGAGATGAAGCGTTTTCCATTGGAGTTGCTGTATCTCATCTTTTGTTTGATGGTATTTCTGCCATTCACTTCATCAATTCATGGGCAAAGTTGGCTCGTGGAGACACATTAGAGCCTCATGAAATGCCCTTTCTGGATCGAACTGTGCTAAAATTCACTGATCCTCCATCAACCTCACGCTTTGATCACCAAGAATTCAAGCCTATGCCTCTCATATTAGGAAGAAGTGACAACACTGTTGAGAGAAACAAGAGGGTAAATGCCACTACGTTGAAGCTGACAGCAGAACAAGTGGCGAAGTTGAAGAACAAGGCGAATGCTGATAAGTCAACAAAAGGGTCAAGACCTTATACCAGATTTGAGGCTATTGCTGCACATGTGTGGAAATGTGCATCTAAGGCTCGTGGATTAGATGAGAATCAACCAACGCTGCTTCGGTTCAGTGGTGATATTCGCAATAGACTCATTCCACCTCTCCCTAGGAATTACATTGGTAATGCTTTGTCCATAGTATCAGCATCATCACACGTTGGAGAAATCTTATCAAGTCCTTTAGCTGATGTTGCTCAGAAAATAAGGGAATCTGTTGAAATGATTACACATGAGTTTATATGCGCACAGATAGATGTGATTAGAAGTCAGGACCATGTGAATAAAGCGAGAACTTTGTACTATGGAGCAAACGAAGGCAAGGATGTACTGTTTTTTGGGAATCCTAACTTACGTATTACAAGTTGGCTGAATTTTGGTTGGGGAAAGCCTGTGTATGTAGGTCTAGCAGGTGTGGTTAGACAAGAGAGGGCTGTGATTACCCAAAGTCCAGATGGTGATGGCTCTGTTATTCTGGTTCTACACTTTCAAGTGGAACATATGCAGCTTTTCAAGAACTATTTCTATAAAGAAATATAA 1329 0.4169 MVTIKASYTVVPNQPTPEGIQWLSDIDQVARLCHTQTIYVFHAKHNHDALVEQMRNSLSKILSHYYPIAGRLRRLEEGGRWELNCNAKGAVLIEAESTKTVNYYGDFLGESANDLVPTVNYTNTFIEELPLLLVQVTSFLGDEAFSIGVAVSHLLFDGISAIHFINSWAKLARGDTLEPHEMPFLDRTVLKFTDPPSTSRFDHQEFKPMPLILGRSDNTVERNKRVNATTLKLTAEQVAKLKNKANADKSTKGSRPYTRFEAIAAHVWKCASKARGLDENQPTLLRFSGDIRNRLIPPLPRNYIGNALSIVSASSHVGEILSSPLADVAQKIRESVEMITHEFICAQIDVIRSQDHVNKARTLYYGANEGKDVLFFGNPNLRITSWLNFGWGKPVYVGLAGVVRQERAVITQSPDGDGSVILVLHFQVEHMQLFKNYFYKEI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03056 442 Gene3D - 1 208 IPR023213 -
Vimu2g03056 442 Pfam Transferase family 1 439 - -
Vimu2g03056 442 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 436 - -
Vimu2g03056 442 Gene3D - 214 440 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03056 Vimu-Chr2 32355046 32356573 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03056 2 440 Monolignol Biosynthesis Gene Families AT5G48930 33.259 2.61e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03056 K13065 - gmx:100778626 656.366