Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03054 AAAACTGACACTTCAACTAGAGTGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATTGAGACTGCAACAGTTCTGATTTTTGGGGTTGATTCAGGTGGGGTAATCAATGGGTGGAATTCAAAGATTGCGAAACGGACAGGTCTACGAGGCAGTGAAGCTATGGGGAAATCCATGGTAAATGAAATTATACATGCGGATTCATGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGGAGAGGAGAAAAAAAATGTAGAGTTTAAAATAAAGCACTTTGGGTTTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATACTTGCACTAGTAAGGACTACACAAATTCTATTGTCGGGAGTCTCAGTCTACTAATTCCATCCATATTTTCTTCTGTTGAGAGTGCTTCCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAAGTGGTTGGAAAAGAGATGAAGTCATAGAAAAATTGCTTCCTGGTGAAATATTTGGAAGTTTTTTGTCGACTTAA 534 0.3858 KTDTSTRVMDELSSVALEMVRLIETATVLIFGVDSGGVINGWNSKIAKRTGLRGSEAMGKSMVNEIIHADSCDTFKNTLSRALQGEEKKNVEFKIKHFGFQQQQKVVYLMVNTCTSKDYTNSIVGSLSLLIPSIFSSVESASCSEWNAAMERLSGWKRDEVIEKLLPGEIFGSFLST 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03054 177 ProSiteProfiles PAS repeat profile. 119 177 IPR000014 -
Vimu2g03054 177 ProSiteProfiles PAS repeat profile. 15 86 IPR000014 -
Vimu2g03054 177 SMART pas_2 17 84 IPR000014 -
Vimu2g03054 177 Gene3D PAS domain 12 130 - -
Vimu2g03054 177 CDD PAS 26 97 IPR000014 -
Vimu2g03054 177 SUPERFAMILY PYP-like sensor domain (PAS domain) 21 101 IPR035965 -
Vimu2g03054 177 Pfam PAS fold 130 172 IPR013767 GO:0006355
Vimu2g03054 177 Pfam PAS fold 18 127 IPR013767 GO:0006355
Vimu2g03054 177 PRINTS Phytochrome signature 37 52 IPR001294 GO:0006355|GO:0009584
Vimu2g03054 177 PRINTS Phytochrome signature 18 34 IPR001294 GO:0006355|GO:0009584
Vimu2g03054 177 PRINTS Phytochrome signature 111 128 IPR001294 GO:0006355|GO:0009584
Vimu2g03054 177 NCBIfam PAS domain S-box protein 22 95 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03054 Vimu-Chr2 32301068 32301691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03054 9 173 Histidine Kinase Gene Family AT2G18790 49.744 3.88e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03054 K12123 - gmx:100808192 259.225