Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03052 ATGGTGCCCAATTTTATCATTTCAAGATTAGTTGCATCATCATCATTCACTGGCTACAAAGGTAGTCATCTTCTATTGGGTTCTCTGCTTTCATGCAAACACACTGCTTCACTTGTTTTCTTCAATTATTTCACTTCAGACACTTCCTCTGATTCTAAATCAGATGGAAAGCAACACAAAGGTTCCACCTTTACTGTGTCTGACCTCATCAACTCATGTGGGATGTCCCAAACTCTGGCTAGGGAACTCTCCAACAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCCGTCATTGATATCCTCAGCATCTATGGGTTCTCAAAATCCCAGCTTGCAAAGCTTGTGGCGAGACATCCTTCCGTGCTATTTACAAATGTAGAGGATACCCTTTTGCCCAAACTCGAATTCTTTCGTTCTATTGGGATGTCCAACACTGACATACCTAAGATCTTGATTGCCAACCATGGTATCTTGAAGAGGCACTTGGAAAACTGCATCATCCCTCGCTATGAGATCCTAAAGAGTGTAGTTCGTGCTGATCGGGAAGTTGTTAGAGCTATTAAAAATGCCCCACTTGGTTTTGTGTATGGTGACTTAATGAATAGGTTGGTTCCAAACATTGACATTTTGAGGGAATGTGGTGTGCCCCAGGCTTCCATCACTCACCTGGTGACTAATTCTCTGTCTGCAGCATATGTGGAGCATTCCAGGTTTGTGGAAGCTATCAAGACAGCTAAGGAAATTGGATTTAGTCCTTTAAAAATTGACTTTGTTGTTGCTATTCACGTGCTTGTAACTATGAGGAAAGAAGTGTGGGAATCAAGGTTTGAGGTTTATGAAAGGTGGGGCTGGAACCGGGAAATGGCTCTTCGAGCATTTAGGAAGTTTCCCAGTTTTATGAAGTTTTCAGGGGAGACATTTTCCAGAAAGATGAGTTTCCTTGTGAAAGATATGGGTTGCTCATCAGAAGCTATTGCTGAATATCCTCTAGTTGTAGCCTACAGCTTGGAGAAGAGGATTATTCCTAGATTCTCTGTAATAAAAATCTTGAAATCAAAAGGTCTTCTTGAGAAAAACGTGCACTTTAGTTCCATTATTTGCACAACTGAGGAAAAGTTCTTGGAGAAATTTGTCGTCAATTTTCAGAATGTTTTGCCCCTCTTACCAGACCTCTACAGAGGTTTGCTCAATCAATCTAATGTAGTGTAG 1212 0.4134 MVPNFIISRLVASSSFTGYKGSHLLLGSLLSCKHTASLVFFNYFTSDTSSDSKSDGKQHKGSTFTVSDLINSCGMSQTLARELSNRVNLKTPDGPNAVIDILSIYGFSKSQLAKLVARHPSVLFTNVEDTLLPKLEFFRSIGMSNTDIPKILIANHGILKRHLENCIIPRYEILKSVVRADREVVRAIKNAPLGFVYGDLMNRLVPNIDILRECGVPQASITHLVTNSLSAAYVEHSRFVEAIKTAKEIGFSPLKIDFVVAIHVLVTMRKEVWESRFEVYERWGWNREMALRAFRKFPSFMKFSGETFSRKMSFLVKDMGCSSEAIAEYPLVVAYSLEKRIIPRFSVIKILKSKGLLEKNVHFSSIICTTEEKFLEKFVVNFQNVLPLLPDLYRGLLNQSNVV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03052 403 Gene3D Transcription termination factor 3, mitochondrial 181 385 IPR038538 -
Vimu2g03052 403 SMART mt_12 256 286 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 SMART mt_12 149 181 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 PANTHER CGI-12 PROTEIN-RELATED 62 380 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 FunFam Mitochondrial transcription termination factor-like 163 386 - -
Vimu2g03052 403 Pfam mTERF 100 306 IPR003690 GO:0003690|GO:0006355
Vimu2g03052 403 Pfam mTERF 267 375 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03052 Vimu-Chr2 32295759 32296970 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu2g03052 mTERF 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03052 K15031 - gmx:100786641 598.586