Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03040 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAGGCCTTTTACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAGTTGGTCCTCGGAGCATTCATCTCTGCGGGTATTATCTCGCCACTGCCCGCAACGCCAATCTTATTGATGATTCTGAATCATACGGAGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGAGTATGATGATAGTTTCATTGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCTCATGACAACGGACCAAAAATTAAGAAAGGAAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGTGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAATCCAGGAAACTGACAATGAAGATAGCCTACCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAAAGAAATGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAAGAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGAGGCTGGACATGTCCTTGTAGATAGTCAGACACATAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTCAAAGTCCAAAAGAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTGAAAATGGAAGACATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACAGATAAAATACTTCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATATCAGTCTTGTTAATCTGCCTCTAAGAAATGAACAACACACAGTTAACGAGGATGTTAAAATTTCAGGCAATGCCGCTGAGATGGATCCTAAAAAGAATAGAGCAAAGAGGAAAAAGAAAGAACAAGTAAACAAAAGTGACTATGGATATAATGAAGAAATCTTCCAAGAGGACAAGGCCAACAGAGATGCAGCAGGGTCACAGAATGCAATTCATAATTTTTTTGAAGAAAAAGAGCAGCATCAGAAGCTTACTAATGAGAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGATAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTTTAAATTCTAATATTACTGTATATGTTGAGCGAAGCGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACCTTCCAATTTTAGAACATTGAAAAATGGACTAGTTATTCAGGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTGTCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGTATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGACACTCTGACAAAATACCACCAAATTCATGGTTGATTTATGACATTGAACTAGTTAAAGTTCATTGA 1968 0.405 MAFWGVEVKPGRPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVVGPRSIHLCGYYLATARNANLIDDSESYGEDIADTETERSDYSDEDEYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIKKGSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQIQETDNEDSLPISSIYKNKASGRVLDKEMDVSVVRGAGDASNKNEEDGGNNIFETNLEAGHVLVDSQTHREAVPSKHLVDPCTSLDVGDIQSPKEKKKKKEKEAKSSCNGRSIKLDNVINELKMEDMTQVIVAGGKQEQHVDDKETETTDKILPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHISLVNLPLRNEQHTVNEDVKISGNAAEMDPKKNRAKRKKKEQVNKSDYGYNEEIFQEDKANRDAAGSQNAIHNFFEEKEQHQKLTNEKMVDNGAYDLPDGNQSDNRKAKKRKKMSKSQGNGEVLNSNITVYVERSGETEMMEEDRSKGEDAKPSNFRTLKNGLVIQEQEKGKKDGKIAASGKKISIYYTGKLKENGAVFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPNSWLIYDIELVKVH 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03040 655 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 654 - -
Vimu2g03040 655 Gene3D Nucleoplasmin core domain 1 99 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 477 511 - -
Vimu2g03040 655 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 522 540 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 283 308 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 289 308 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 408 431 - -
Vimu2g03040 655 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 563 652 IPR001179 GO:0003755
Vimu2g03040 655 MobiDBLite consensus disorder prediction 522 541 - -
Vimu2g03040 655 Gene3D - 518 655 IPR046357 GO:0003755
Vimu2g03040 655 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 567 655 IPR001179 GO:0003755
Vimu2g03040 655 MobiDBLite consensus disorder prediction 151 165 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 147 166 - -
Vimu2g03040 655 SUPERFAMILY FKBP-like 500 654 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 410 431 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 334 375 - -
Vimu2g03040 655 MobiDBLite consensus disorder prediction 360 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03040 Vimu-Chr2 31632137 31643834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03040 566 652 Calmodulin-binding Proteins AT5G48570 43.182 1.04e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03040 K14826 - gmx:100798135 795.808