Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03039 ATGAATGCTAAAGTACAAGACTGTGATGATTCCAAAAAGGGTGAAGAAGTTGTTCTTCCTGGCTTTAGATTCCACCCTACTGATGAAGAACTTGTTGGGTTTTATCTGCAGAGAAAGGTGGAAAAGAAGCCTCTCAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTTGGGGACAAAGAATGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGTGTGAGGCCAAACAGGGTAACTAGGTCAGGGTTTTGGAAAGCCACAGGAATAGACAAGTCGATATACTGCGTGAAGGAACCCCATGAATGCATTGGCCTGAAGAAGTCGTTGGTGTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAATGCTAAATCCTCCACCAACATTGCTAATACTACCAATAACCTTCATGAAGCTGAGGTGTGGACACTGTGCAGGATATTCAAACGCATCCCATCTTTCAAAAAGTACAGTCCAAATTTGAAAGACACGACAGCCCTGACGAAATCGAACACTGTGAATTCGAACACAAGCACCTTAGATTCTGAGAACTGCAAGCCATATTTGATTTGCAGAGACCCTGAGATGATGCAACAACTAAAGCCAGTATTTGGACAGGTTGATGAAAAGAAACACTTGTTTCTTGGGCAGTTTGGGCAACTACCTCATCTTCAACCACCATCAACCCCTTACCCAACTTTTTGGAACCACAATGTTGAAGACTATGCATTTGCCAATGAAAATTGGGATGATCTCAGATCTGTCGTTCAGTTTGCCATTGATCCTTCCTCGGTCTTTGATTGTACAGAATCACATTTCCCACCCTACTTTTCTTAG 918 0.4216 MNAKVQDCDDSKKGEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLKIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSSTNIANTTNNLHEAEVWTLCRIFKRIPSFKKYSPNLKDTTALTKSNTVNSNTSTLDSENCKPYLICRDPEMMQQLKPVFGQVDEKKHLFLGQFGQLPHLQPPSTPYPTFWNHNVEDYAFANENWDDLRSVVQFAIDPSSVFDCTESHFPPYFS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03039 305 Gene3D NAC domain 27 180 IPR036093 GO:0003677|GO:0006355
Vimu2g03039 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 208 - -
Vimu2g03039 305 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Vimu2g03039 305 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Vimu2g03039 305 SUPERFAMILY NAC domain 15 176 IPR036093 GO:0003677|GO:0006355
Vimu2g03039 305 FunFam NAC domain-containing protein 35 27 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03039 Vimu-Chr2 31430634 31435394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03039 6 177 NAC Transcription Factor Family AT5G39820 58.378 1.01e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu2g03039 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03039 - - gmx:100819795 543.117