Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03036 ATGAGGTCCATTTTTGAGAAAAATCCTACCAAGATCAAGAACTATGGAATTTGGCTGCGATATCAGAGCCGAACCGGTTATCACAACATGTACAAGGAATACAGAGATACTACTCTGAACGGTGCTGTTGAACAAATGTACAACGAAATGGCATCTCGTCATAGAGTCAGGTGTCCATGCATCCAGATTATTAAGACTGCCACCATCCCAGCTAAGCTTTGCAAAAGGGAGAGCACCAAGCAATTCCTCAACTCCAAAATCAAGTTCCCTTTGGTGTTCAAGAAGGTGAGGCCCCCAACTAGGAAGCTCAAAACAACATACAAGGCATCCAAGCCCAACCTTTTCATGTAA 351 0.4359 MRSIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFLNSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03036 116 FunFam 60S ribosomal protein L18a 10 85 - -
Vimu2g03036 116 SUPERFAMILY RplX-like 9 84 - -
Vimu2g03036 116 Gene3D - 7 81 - -
Vimu2g03036 116 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 2 66 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vimu2g03036 116 PANTHER 60S RIBOSOMAL PROTEIN L18A 2 115 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03036 Vimu-Chr2 30971314 30973090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03036 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.793 3.85e-75 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03036 K02882 K22683 csv:101207017 230.335