Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03006 ATGTCAGCAAACAATTCTTTGCACGTGGAATTATCGAAGAAGACTTCGTTTCTGGGATTGAAATTATGGGTTTTGATTGGGATTGGTGTTGGTGCTTTTATAGTTCTGATTCTTTGTGCATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTCTGGACAAGTTCTCTTTGTCACAAATACCGCATGTCTCAAAAGACATCAGAGTTGACAAGGTTGGGGTGCAGACTTCATATGATCAAGCAGAAAGTGTAGCTATTCCTGTTCAAGACAAAGCAAGTGAGAACAATTCTGACAAGTTCTTAGTTCATTTGCGCAAAAGCAAATCAGGCGATGCTGATAATATCAGTCAGTGCAGTTCAGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCCGGCACTGTTAAGAAGCAGTCTGCATTGGCATTTGGTGGAGTGGTAACTGCCTCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGTCACTGGTTCACACTAAGAGATCTGGAACTTGCAACTAGTCGCTTCTCTCCAGAAAATGTGATTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGAAGATTGATCAATGGATCCGAGGTGGCGGTTAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAAGCTATTGGCCATGTGAGACATAAAAATCTTGTACGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTACTGGTGTATGAATATGTGAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCGCGGATTAAAGTTATAACTGGCACAGCCAAAGCACTGGCTTATTTACATGAAGCAATAGAACCGAAAGTCGTTCACCGGGATATCAAGTCTAGCAACATATTGATTGATACAGATTTCAATGCAAAAGTTTCTGACTTTGGTTTGGCCAAACTTTTGGACTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACGTTTGGGTATGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACGAGAAGGGCCGAGGAAGTTGTGGATTCAAGGCTTGAAGTGAAACCATCAACTCGTGCTTTAAAGCGATCTCTTCTGGTTGCACTTAAGTGTGTTGATCCTGAAGCAGAAAAGAGGCCTAAAATGAGTCAGGTTGTGAGAATGCTTGAAGCCGATGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACAGCCAGCATGGAAATTGAGTCTCTGAAGGATATTTCTGGCCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGCCATGCACCAGAAACAACTCAAGCGTAG 1407 0.4328 MSANNSLHVELSKKTSFLGLKLWVLIGIGVGAFIVLILCALSVWVMFRRKSRRSLDKFSLSQIPHVSKDIRVDKVGVQTSYDQAESVAIPVQDKASENNSDKFLVHLRKSKSGDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALAFGGVVTASPLVGLPEISHLGWGHWFTLRDLELATSRFSPENVIGEGGYGVVYRGRLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTLTWEARIKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTDFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVNLVEWLKMMVGTRRAEEVVDSRLEVKPSTRALKRSLLVALKCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKVKGSEGHAPETTQA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03006 468 PANTHER OS01G0323000 PROTEIN 1 357 - -
Vimu2g03006 468 MobiDBLite consensus disorder prediction 424 468 - -
Vimu2g03006 468 FunFam Os07g0541700 protein 264 353 - -
Vimu2g03006 468 Gene3D Transferase(Phosphotransferase) domain 1 357 435 - -
Vimu2g03006 468 Gene3D Transferase(Phosphotransferase) domain 1 264 356 - -
Vimu2g03006 468 SMART serkin_6 188 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03006 468 MobiDBLite consensus disorder prediction 446 460 - -
Vimu2g03006 468 ProSiteProfiles Protein kinase domain profile. 188 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03006 468 SUPERFAMILY Protein kinase-like (PK-like) 172 418 IPR011009 -
Vimu2g03006 468 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Vimu2g03006 468 FunFam Putative receptor-like protein kinase 170 263 - -
Vimu2g03006 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Vimu2g03006 468 Pfam Protein kinase domain 191 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03006 468 MobiDBLite consensus disorder prediction 424 439 - -
Vimu2g03006 468 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03006 Vimu-Chr2 29837881 29841999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03006 19 420 Trihelix Transcription Factor Family AT1G70460 34.292 7.36e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu2g03006 Pkinase 2.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03006 - - gmx:100813931 839.336