Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03005 ATGGTGCCTCGTATTCTCATTACTAGACTATCTGCGTCCTGCACACACCACAGAAGCATCCAATTCCAATTGGGTTCTCTGCTGCAACACAAGCACAATGCTTTTCTTTTCAGGTTCAACACATTCACCTCTGGTGGGGACAGCCGCAAAGGTGACACCTTTACCGTGCTTTACCTCTTCAACTCATGTGGGTTGTCCCTGGAATTGGCTAGGAAAGTCTCCAAGAGTGTGAATTTGAAAACCCCAGATGGTCCAAATGCTGTTATTAACACTCTCAAGAACTATGGATTCTCCGAAACTCAGGTTGCAAAACTTGTCGAGAAGAATCCCCGTGTGCTTACTGCAAAGGTGGAGAAGACCCTTTTGCCCAAACTAAAATTCTTCCACTCTATTGGGGTTTCCAACACTGACGTGCCTAAGATCGTGAATGAATGTCCTTCAATCTTGCGGAGGAGTCTGGGAAAATGCCTTCTGCCACGATACGAGATTATCAGGAGTATAGTTCGTGATGATCTGGAAGTTGTTAGAATTTTGAGAAAATCCCCAGTTGGTTTCATAATGTGTGACCTAAAGAAATGCTTGATTCCAAACATTAAGGTTTTGAGGCAGTCTGGGGTTCCTCAGGGTTCAATCTCTCTGCTGATGGTCAACTTCCCCTCTGCAACATTGGTGAAGCATTCCAGATTTGTTAAAGTTGTCGAGAGAATTAAGAAATTGGGGTTTGACCCTACGAGAACAAGTTTTGTCATGGGTGTCCAAGTGCTTTTAACGATGCGTAAAGCGGCATGGGAATCGAGATTTGAGATTTATAAGAGGTGGGACTGGAACAGGGAAATAGTTCTTCAGGCGTTTCTGAAGTATCCCAATTTTATAAAATTGACCGAGGAGACAATTACGAAAAAAATGACTTTCCTAGTTAAGGATATGGGTTTGCCATCATTGGAAATTGCCGCATATCCTCCAGTTCTAGTCTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCAATAATTAAAATCTTGAAATCAAAAGGTTTGGTTAGGAGGAGTTTGAGTTTTGGTTACTATATGGGCATTAAGGAGAATGTTTTTTTGAAGAAATATGTCGATAGCTTTAAGGAACATTTGCCTCTCTTACCAGATGTCTACAAAGGATTGATTCATCGTGATGATTTAATGTAG 1182 0.4162 MVPRILITRLSASCTHHRSIQFQLGSLLQHKHNAFLFRFNTFTSGGDSRKGDTFTVLYLFNSCGLSLELARKVSKSVNLKTPDGPNAVINTLKNYGFSETQVAKLVEKNPRVLTAKVEKTLLPKLKFFHSIGVSNTDVPKIVNECPSILRRSLGKCLLPRYEIIRSIVRDDLEVVRILRKSPVGFIMCDLKKCLIPNIKVLRQSGVPQGSISLLMVNFPSATLVKHSRFVKVVERIKKLGFDPTRTSFVMGVQVLLTMRKAAWESRFEIYKRWDWNREIVLQAFLKYPNFIKLTEETITKKMTFLVKDMGLPSLEIAAYPPVLVYNLEKRIIPRFSIIKILKSKGLVRRSLSFGYYMGIKENVFLKKYVDSFKEHLPLLPDVYKGLIHRDDLM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03005 393 Pfam mTERF 89 301 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 Pfam mTERF 268 351 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 Gene3D Transcription termination factor 3, mitochondrial 157 376 IPR038538 -
Vimu2g03005 393 SMART mt_12 175 207 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Vimu2g03005 393 FunFam Mitochondrial transcription termination factor-like 153 376 - -
Vimu2g03005 393 PANTHER CGI-12 PROTEIN-RELATED 53 371 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03005 Vimu-Chr2 29820969 29824935 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu2g03005 mTERF 7.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03005 K15031 - gmx:100813396 512.686