Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02994 ATGATATCATACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCGAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAAGTAA 378 0.4153 MISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02994 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 113 IPR000504 GO:0003723
Vimu2g02994 125 SUPERFAMILY RNA-binding domain, RBD 35 123 IPR035979 GO:0003676
Vimu2g02994 125 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 124 - -
Vimu2g02994 125 CDD RRM2_MEI2_like 45 115 - -
Vimu2g02994 125 Gene3D - 34 125 IPR012677 -
Vimu2g02994 125 SMART rrm1_1 47 115 IPR000504 GO:0003723
Vimu2g02994 125 FunFam Protein MEI2-like 1 45 125 - -
Vimu2g02994 125 SUPERFAMILY RNA-binding domain, RBD 2 44 IPR035979 GO:0003676
Vimu2g02994 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02994 Vimu-Chr2 29525832 29526388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02994 2 103 Eukaryotic Initiation Factors Gene Family AT1G22760 28.302 7.47e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02994 - - lja:Lj6g3v0921010.1 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02994 2 29525832 29526388 Vimu2g02994 2 29525832 29526388 ECH