Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02973 ATGGACGGTGCGCCACCATCCGCCGCAGCAGCAGCAGCAGGAGGACCGGCGCCGTTTCTTCTAAAGACCTACGACATGGTTGACGATCCCTCCACCAACGACATCGTTTCGTGGAGTTCATGCAACGCCAGCTTCGTCGTGTGGAATCCGCCGGAGTTCGCTCGCCTTCTTCTCCCCACCTATTTCAAGCACAACAACTTTTCCAGCTTTATCCGCCAGCTCAATACCTACGGTTTTCGAAAAATACACCCAGAGCGCTGGGAATTTGCAAATGATGAGTTTGTGAAAGATCAGAAGCATCTCCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTATTGTAGATCCAGAGAGAGCAGCATTTGAGGAGGAAATTGAGAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCAATATTCATAACTTCAAACAACATCAGTCAACAGCAAAGCTTCAATTAGAAGATTTTCTGCAGCGGTTAGAGACTACTGAAAAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCTGCGTATAAGAAGAGGCGATTGCCTCAAGCTGATCATGTTCAACCAGTTGCAGAAAGCAGCTTCGTGGACAGTCACAGCAATTTTAGAATGGAATTTGGAAATATTTTCCATCAGGATTTCTCGAATAAACTCAGACTGGAATTGTCACCCGCCGTGTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGTCCACAGAAAAAACTGTCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACATCTCTTACATTTGCACCTGAAACATTAGAACTTGCGGATACGGGGGCTTCTTTTACTTTTAAGATGGATACATGTTTGCCGCGAAAAGCAACAACTGCTGAGAACTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTTGCCAGTTAAATTTAACCCTGGCATCTTGTCCAGTGCAAGTAAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGCCAAGAAATTGGCAAATTGGCAGAATCGAGATTTTTTGCGAGTGTAAAAGAATCTGAAAGTGGTGTTTCCTCAAACCAAAATCTAGCTGTTGAGGCCACCAATTTAGCTTCACCACAGGAGGCTCCAAGTAACAACCAAGTTAATCCAGCTCCTCCGGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCAAACCCACATGATGAGCAAGACGAAGGACGCGCAGTTCATGGAATATCTAGAAACATTAAGAACATGGATCAACTCACACTTTGA 1443 0.4401 MDGAPPSAAAAAAGGPAPFLLKTYDMVDDPSTNDIVSWSSCNASFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSIVDPERAAFEEEIEKLSREKTSLESNIHNFKQHQSTAKLQLEDFLQRLETTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYKKRRLPQADHVQPVAESSFVDSHSNFRMEFGNIFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTRTSLTFAPETLELADTGASFTFKMDTCLPRKATTAENSKLISLEPSSEEGDSCQLNLTLASCPVQVNRNSYSARSPQIDCQEIGKLAESRFFASVKESESGVSSNQNLAVEATNLASPQEAPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPHDEQDEGRAVHGISRNIKNMDQLTL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02973 480 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02973 480 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02973 480 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02973 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 276 IPR027725 -
Vimu2g02973 480 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02973 480 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02973 480 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02973 480 MobiDBLite consensus disorder prediction 452 480 - -
Vimu2g02973 480 MobiDBLite consensus disorder prediction 263 291 - -
Vimu2g02973 480 Coils Coil 126 153 - -
Vimu2g02973 480 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Vimu2g02973 480 FunFam Heat shock transcription factor 1 12 109 - -
Vimu2g02973 480 MobiDBLite consensus disorder prediction 452 467 - -
Vimu2g02973 480 Gene3D - 13 109 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02973 Vimu-Chr2 28934251 28938162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02973 1 480 HSF AT4G13980 54.049 1.83e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu2g02973 HSF_DNA-bind 4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02973 K09419 - gmx:100816484 872.463