Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02969 CTTCAAACCATGGAGCTTCCAAATCAAGCTCAAGAAGGCTCTTCTCAAAAGAAGATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTGTCAGTTTTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCAACTATTGAAAGGTACAAAAAGGCAAGTGCTGCTTCCACAAAGGCAGAATCTGTATCTGAAGTTAATACGCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGGGATATTCAGAACCTAAACAGGCACATCCTTGGGGAAGCTCTTGGTTCTCTGAGTCTTAAGGAACTGAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGTAGGGTTAGGTCTAGAAAGACTGATGCACTCAAAATTTTGCAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAGCAGCAAACAAATATGATGCAAGGAACACTGTGTGAGTCACTTCCTTCACAATCTTATGACAGGAACTTTTTCCCTGTAAATCTCATAGGTTCTGATCAACAATATTCACGTCAAGACCAAACTGCTCTCCAACTTGTGTAA 765 0.4209 LQTMELPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKASAASTKAESVSEVNTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKTDALKILQHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQQTNMMQGTLCESLPSQSYDRNFFPVNLIGSDQQYSRQDQTALQLV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02969 254 SUPERFAMILY SRF-like 20 97 IPR036879 GO:0003677|GO:0046983
Vimu2g02969 254 Gene3D - 31 104 IPR036879 GO:0003677|GO:0046983
Vimu2g02969 254 MobiDBLite consensus disorder prediction 1 22 - -
Vimu2g02969 254 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 Coils Coil 108 128 - -
Vimu2g02969 254 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Vimu2g02969 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 Pfam K-box region 104 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g02969 254 Coils Coil 186 210 - -
Vimu2g02969 254 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 ProSiteProfiles K-box domain profile. 105 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g02969 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 210 - -
Vimu2g02969 254 MobiDBLite consensus disorder prediction 1 16 - -
Vimu2g02969 254 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Vimu2g02969 254 CDD MADS_MEF2_like 20 94 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02969 Vimu-Chr2 28818372 28823835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02969 1 254 MADS-box Gene Family AT3G58780 65.637 1.03e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu2g02969 K-box 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02969 K09264 - gmx:100808734 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02969 2 28818372 28823835 Vimu2g02969 2 28818372 28823835 ECH
Vimu2g02969 2 28818372 28823835 Vimu1g00491 1 2999659 3003762 PCT