Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02951 ATGGAAGAGATAGAAACCCTAGAAAGAGAAAGGGAGAGCTCCCACATCCCCAAATTTGCCCCTAAAGGGGTGAAAAACGTACTGGCGCTCAGCGGTGGGCACAATACTCATATTCCTTTCAGCGTTGACGTTTATGCGTCTGGCAATGGTTTCTCTGAAGAGGCTGGCGCTCAGTGCTGCCGCTTAGCGGTGGCTGTGACACTTAATTTCCCCTCAGCGTTGGTGCTTAGGCGTTGGCTAGATAATTCCTCCATAAGGCTGGCGCTCAACGGTGGATTTGCAATTAATTGTTCCGGGCTTGGTTTTGGGAATGGAAGGAGGGATTATAACATCGAGAGAATTGTGTTTGAAGTGGTTATTGAAGAGGTTGATGATAGTGGTGCTCGAAAATACTCCCAAGCCATTGATCTATATACTCAAGCAATTGAGCTAAACGGTGGAAATGCAGTTTACTATTCTAATCGTGCCTTTGCTCATCTTCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCCTCAAAGGCTATTGAAATTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTTATATTGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGATGGATATCACAGTAGCTGAGGTTGCACAGCACTTACCTAAGGGAGCTCATATTGACCAGGAAGACGCATTAGGCAGTTATAACCGTATTATTAGAATTATTAGTATTATTAGTTGGGATCACGTTTATCCTATGGAGAGAGAATTTGGCTCTCTTGAAGGTTGTTACAGCTGCGCAATAGTTTTTCCAATCCAGGAACCTATCATTTTGGTCCGACCTGTCGGATCAGTGAGAGACAGGAGCGAGATGGAGGGAAAACTAAATGCACTAGAAGGAAGGATGGAGGGAAGGATAAATGAGGGCTTGAAGGCGGAGACGATGGGCTTACAGCGAGAACTTAGAGAGTTCATGCGAATGTTTGGAGAACGAGGACGAAATGCTAAGAGCCATTGGGAGGGAAGTCAGGATTCAGTGAATGGAATTAGAGGAGAACGAAGAGAAGATGACGAAGAAGATACGAGTGGCGAGCAACCAAACTGGGTGAAGAGGGTCGAGTTAGCAACCTTTGAAGGAATCAATCCGCTAGGGTGGATTTCTCACGTGGAAAAATTCTTCGAAATCCAGAAGGTGACGAAGAGGGAAAAGCTCCGACTGGCATACGTCTGCATGGAAGGGAGCACAAGTTACTGGTACCGCTTCTGGAAAAAAAAAACACAGGCGCCAACATGGGAGGGGTTGCGGGAAGCTCTAATAAGGAGGTTTGGAGGTCGCGACCGAGGAACTGTATTTGAGAGGCTAGCGGCGGTCAAGCAGAACAACACCGTTGATGAGTATATCCAGGACTTTGAAATGTTAGTGGCACATACGAAGGTCGTGTCGGAGGGTCAGCTCCTGGGATATTTTTTCGCAGGTCTGCAAGGGGTAGTCAGAAGTCAGATTCGTCCGCATAATCCCCGAGATTTATTTTCGGCAATGGAGGTGGCCCGGGACGTAGACGAGGCGAGTCGAGGCGCGCGAATGGCGGGAGGAACCGGAGCCAGGAGCGGCCAGTGGGACCGACACTGTAGCGAGATCGGAACCGATCAAACAGGGTTTGGAATGATCGGGGGTAGCAGAGAATACAACAACGATTCGAAGAGAAGTAGTACTATGAGCGACGACCGCGGAAGAGGCATAAGGAAGCTACCTTACCCCGAATACGTCAGGAGGAGGGAAGAGGGGTTATGCTTCCATTGTGGTGGCCCCTACAGTCCAGGGCATTGTTGCCCAGAAAAAAGCTTGCGGGTGGTGATTATGGGGGAAGACGAGATCGGTGACGAAGAGGAAGAAGGTGGGGAAGAGGGTGAGCCGAAACGCATGGAGTTGTCGTCGTTTTCCGTTAGCGGACTTACTCCGCACAAAACCATGAAGCTACAAGGGTGGGTCCGGGAAAGAGGTGGCACTAGCCACAATTTTATAGCAACAGGGTTGGTGAAGAGGCTGGGTTTATCAGTAGAAGATACCCCACCATATAGGGTTCCAGTAAACATAGGTGAAACAGAGGTGATGGAACAATTTTGTTTGTTTGAATTAGGAGAAGTGGACTTAATTTTTGGGATGGAATGGTTGGCTAAATTAGGAGAGGTAGAGAAGGTGATAATGATAAAAGGGGACCCCACTGCACTGGAACCGAAAACTTTCGTGAATATTAAAGTGGGGGATGGGATGACTATGGGGTGGACTTTCGGAAAGGAAGAAATTGAAAACCCTAGACAGCAGCAAAGAGAAGAAGTAAAACCACATGTGGGCCTTGTGGTGGTGGCAATGGCGGAGCACTTGCCATCGATGTTCGGGACGGGGACGGTCATGGTGAATTGCCCATTCTACTTCAAGAGAGGCGCGTGTAGGCACACCGAGCATAAGTCCGACCATTCTGCTCTCCAACATGTACTAGCGCTCCGACATGATAACCCCGGCGGCGATGCCCACGGCAACCCCCTCGACCACCGCCAGATCCAGGACGACTTCGAGGAGTTCTATGAGGATATCTTTGAGGAGCTCTCCAAGTACGGCGAAATCGAAAGCCTCAAGGTTTGCGACAACCTCGCCGACCACATGGCGGGCAATGTATACGTTAAGTTCAAAGAGGAGGAGCATGCTGCAAATGTTGCCAGTGATCGTGGACTTCTCGTCGGTGACGGTTTTTCAAGGAGTTACTTGCAGGAAGTACGAGGAGAATATTTCATCATAGAAGGAACAACAGTAGCAAGAGTCGTTACGGGCATCACAACCATGACGAGCAGTCCCATCGTAATCATAGTAGAAAGTACAATGACAGGGACCACCATCAAGAGAGTCGTCGTAGGAAACGCAAGAGTTCGAGTCCTGAACTTAGAGGAAGAAATGGAAGTTCGAGACGGAGGAAGTACTGCAGATATATGTGAATGGCAGGAAAGGGGAAGGAAGGGAGCAACATGGGTGGATGACAAGGTTGCACATCAGGTGGTGGGTAATGATAGGGAAGACGCGTTAGGCAGTTATAACCGTATTATTAGAATTATTGGTATTATTAGTTGGGATCACGTTTATCCTATGGAGAGAGAATTTGGCTCTCTTGAAGGTTGTTACAGCTGTGCAGTGGCCATACTGAATAGAGAATATACAGATTATACTCTTTTTCTGGTGTATACGACTGGAGAGCTTGGTACACCCAACTATGTGAGAGATAGAAACATAAAGAAATCAAAGACATCGGTGGTGCTGGCTAATGTGGGCCAATGTGGTCTGTACTTGCAGCCTGATACTGTTTCAGGGGCAACTGCAACTGAAATGTTGCACATTTGCAGCTGCATCATGTAA 3402 0.4791 MEEIETLERERESSHIPKFAPKGVKNVLALSGGHNTHIPFSVDVYASGNGFSEEAGAQCCRLAVAVTLNFPSALVLRRWLDNSSIRLALNGGFAINCSGLGFGNGRRDYNIERIVFEVVIEEVDDSGARKYSQAIDLYTQAIELNGGNAVYYSNRAFAHLRLEEYGSAIQDASKAIEIDPKYSKGYYRRGAAYIGLGKFKEALKDFQQMDITVAEVAQHLPKGAHIDQEDALGSYNRIIRIISIISWDHVYPMEREFGSLEGCYSCAIVFPIQEPIILVRPVGSVRDRSEMEGKLNALEGRMEGRINEGLKAETMGLQRELREFMRMFGERGRNAKSHWEGSQDSVNGIRGERREDDEEDTSGEQPNWVKRVELATFEGINPLGWISHVEKFFEIQKVTKREKLRLAYVCMEGSTSYWYRFWKKKTQAPTWEGLREALIRRFGGRDRGTVFERLAAVKQNNTVDEYIQDFEMLVAHTKVVSEGQLLGYFFAGLQGVVRSQIRPHNPRDLFSAMEVARDVDEASRGARMAGGTGARSGQWDRHCSEIGTDQTGFGMIGGSREYNNDSKRSSTMSDDRGRGIRKLPYPEYVRRREEGLCFHCGGPYSPGHCCPEKSLRVVIMGEDEIGDEEEEGGEEGEPKRMELSSFSVSGLTPHKTMKLQGWVRERGGTSHNFIATGLVKRLGLSVEDTPPYRVPVNIGETEVMEQFCLFELGEVDLIFGMEWLAKLGEVEKVIMIKGDPTALEPKTFVNIKVGDGMTMGWTFGKEEIENPRQQQREEVKPHVGLVVVAMAEHLPSMFGTGTVMVNCPFYFKRGACRHTEHKSDHSALQHVLALRHDNPGGDAHGNPLDHRQIQDDFEEFYEDIFEELSKYGEIESLKVCDNLADHMAGNVYVKFKEEEHAANVASDRGLLVGDGFSRSYLQEVRGEYFIIEGTTVARVVTGITTMTSSPIVIIVESTMTGTTIKRVVVGNARVRVLNLEEEMEVRDGGSTADICEWQERGRKGATWVDDKVAHQVVGNDREDALGSYNRIIRIIGIISWDHVYPMEREFGSLEGCYSCAVAILNREYTDYTLFLVYTTGELGTPNYVRDRNIKKSKTSVVLANVGQCGLYLQPDTVSGATATEMLHICSCIM 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02951 1133 MobiDBLite consensus disorder prediction 554 579 - -
Vimu2g02951 1133 CDD retropepsin_like 668 725 - -
Vimu2g02951 1133 Gene3D Tetratricopeptide repeat domain 118 232 IPR011990 GO:0005515
Vimu2g02951 1133 FunFam Splicing factor U2AF small subunit 830 911 - -
Vimu2g02951 1133 MobiDBLite consensus disorder prediction 523 542 - -
Vimu2g02951 1133 PRINTS U2 auxiliary factor small subunit signature 882 904 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g02951 1133 PRINTS U2 auxiliary factor small subunit signature 807 826 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g02951 1133 ProSiteProfiles TPR repeat profile. 149 182 IPR019734 GO:0005515
Vimu2g02951 1133 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 790 905 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu2g02951 1133 Gene3D - 819 908 IPR012677 -
Vimu2g02951 1133 Pfam Ty3 transposon capsid-like protein 392 518 IPR045358 -
Vimu2g02951 1133 Pfam Tetratricopeptide repeat 151 181 IPR019734 GO:0005515
Vimu2g02951 1133 SUPERFAMILY TPR-like 129 209 IPR011990 GO:0005515
Vimu2g02951 1133 MobiDBLite consensus disorder prediction 334 365 - -
Vimu2g02951 1133 SUPERFAMILY RNA-binding domain, RBD 856 903 IPR035979 GO:0003676
Vimu2g02951 1133 SMART tpr_5 183 220 IPR019734 GO:0005515
Vimu2g02951 1133 SMART tpr_5 149 182 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02951 Vimu-Chr2 28359370 28372527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02951 130 229 U-box Gene Family AT3G07370 27.273 5.41e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02951 - - var:108330141 398.282