Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02949 ATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGATACTTTTGTCGAACTCTTTGCGGAAGTATTCTGCTTTTTACCACTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTCTGTGAACCTCCTGAAGAAGGGCTGATGTGTGAAATTCTTTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGTCTTTCTTTTGGTCCAGATGTTACAGAACAGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGAGATCTCATGAAGTAAAGGATGAAGGCTACGAGATTGAACATGATGGTAAACTCATAACTGTCTTTTCTGCTCCAAATTACTGTGACCAGCCATTTGCTTACATGATTGTCTCAGAAGATTTTGTGGATCCCAACCCCACTTCATGGAAAGAGACTTTTGTTGTTATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGCCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 648 0.4136 MNKIYGFEGEVRSKLNDTFVELFAEVFCFLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCEILWSDPQPLPGRGPSKRGVGLSFGPDVTEQFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQPFAYMIVSEDFVDPNPTSWKETFVVMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02949 215 PRINTS Serine/threonine phosphatase family signature 133 149 IPR006186 GO:0016787
Vimu2g02949 215 PRINTS Serine/threonine phosphatase family signature 25 51 IPR006186 GO:0016787
Vimu2g02949 215 PRINTS Serine/threonine phosphatase family signature 111 131 IPR006186 GO:0016787
Vimu2g02949 215 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vimu2g02949 215 SMART pp2a_7 1 197 IPR006186 GO:0016787
Vimu2g02949 215 SUPERFAMILY Metallo-dependent phosphatases 1 209 IPR029052 -
Vimu2g02949 215 Gene3D - 1 214 IPR029052 -
Vimu2g02949 215 Pfam Calcineurin-like phosphoesterase 23 122 IPR004843 GO:0016787
Vimu2g02949 215 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02949 Vimu-Chr2 28348132 28349563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02949 2 115 Calmodulin-binding Proteins AT5G63870 33.108 5.12e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02949 K04460 - gmx:100806083 368.622