Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02948 ATGACTTTTGATGCATTCTTTCTCAGAGAACTTGGTGTTGGGGTTCTCATCTTCTTGTTATCACGCTTTTTCATTAGATCAATAGTCACAAATTCTGTACATCTACCTCCAGGACCAAGAGGATGGCCAATTCTTGGTGTTCTTCCACTTTTGGGCAGCATGCCTCATGTCACACTCACAAACATGGCCAAGAAATATGGAGCTGTCATGTACCTCAAAATGGGAACTTGTGACACTGTGGTAGCCTCAAGCCCGGATGCAGCCCAAGCATTCCTCAAGGCCTTGGACCATAATTTCCTAAACAGACCAACTATTGCTGGGGCAACCTACTTGGGGTACAATGCACAAGACCTAGTTTTTGCAAACTATGGACCCAAATGGAAGCTCCTTAGGAAGCTAGCCAACCAACACATGCTTGGTGGGATGGCTCTTAATGATTGGGCACATGTGAGAGCAAGTGAGGTGAAACACATGCTAAAAGCCATGTATGACTGTTCCAAAGAAGGGGAATTAGTAGTGGTGAGTGATTTGTTGAGTTGTGCAATCACTAATATTGTGAGCCAAGTTGTAATTAGCCAGAGAATATTTTCAAACCAAGGGTTGGAGTCTAAGGAGTTTAAGGAGATGGTGGTGGAATTCATGACAATTTCTGGTGTGAACATTGGTGATTTTGTACCTTCCATTGCTTGGATGGACTTGCAAGGTGTGGTGGGAAAGATGAAAAGGCTACATAAGAGGTTTGATGTGCTTTTGAGCAAGATTATTGAGGAGCATCTCAAGTCTTCTCATCAACGTATAGGGAAGCCAGATTTTCTTGATATTGTGATGAAAAATCCTGAAGATCCTTCTCAAGAAGGATTGAGTTTATCCAACATCAAGGCTCTATTATTGAATCTGTTCACAGCAGGCACAGACACATCAACTAGCATCATAGAATGGGCAATAGCTGAAATGTTAAAAAACCCTAATATTTTGATTAGGGCACAGAAAGAGATGGATGAAGTAGTAGGAAGGCAAAGAGTCCTTGTTGAATCTGACCTACCCAAATTACAGTACCTTGAAGCAATCTGCAAGGAGACATATAGGATGCACCCATCTACACCCCTTAGTGTTCCCAGGATAGCCACTGAAGCATGCAATGTTAATGGGTATTACATCCCTAAGAACACAAGGTTGAATGTGAACATATGGGCAATAGGGAGAGACCCTAATGTGTGGTCAAACCCATTAGAGTTCAATCCAGAGAGGTTTCTCAAAGGGAAGAATGGAAAAGTTGATCCTACTGGAGTTCATTTTGAGTTGATTCCCTTTGGAGCTGGAAGGAGGATTTGTGCAGGCTATAGAATGGCTATTTTGCTCATTCAGTACATTTTGGGCACTTTGGTGCATTCTTTTGACTGGAAATTACCAAATGATCAAGAGTTAAGCATGGATGAGGCCTTTGGACTCACTTTGCAAAAGGCAGTGCCTCTCTCAGCCATCGTTAGCCCTCGTTTGCTCCCAGATGCTTATGTTTGA 1518 0.4256 MTFDAFFLRELGVGVLIFLLSRFFIRSIVTNSVHLPPGPRGWPILGVLPLLGSMPHVTLTNMAKKYGAVMYLKMGTCDTVVASSPDAAQAFLKALDHNFLNRPTIAGATYLGYNAQDLVFANYGPKWKLLRKLANQHMLGGMALNDWAHVRASEVKHMLKAMYDCSKEGELVVVSDLLSCAITNIVSQVVISQRIFSNQGLESKEFKEMVVEFMTISGVNIGDFVPSIAWMDLQGVVGKMKRLHKRFDVLLSKIIEEHLKSSHQRIGKPDFLDIVMKNPEDPSQEGLSLSNIKALLLNLFTAGTDTSTSIIEWAIAEMLKNPNILIRAQKEMDEVVGRQRVLVESDLPKLQYLEAICKETYRMHPSTPLSVPRIATEACNVNGYYIPKNTRLNVNIWAIGRDPNVWSNPLEFNPERFLKGKNGKVDPTGVHFELIPFGAGRRICAGYRMAILLIQYILGTLVHSFDWKLPNDQELSMDEAFGLTLQKAVPLSAIVSPRLLPDAYV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02948 505 FunFam Cytochrome P450 82C4 27 496 - -
Vimu2g02948 505 SUPERFAMILY Cytochrome P450 36 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 Pfam Cytochrome P450 36 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 Gene3D Cytochrome P450 25 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PANTHER CYTOCHROME P450 98A9 14 501 - -
Vimu2g02948 505 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS P450 superfamily signature 444 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Vimu2g02948 505 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02948 505 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02948 Vimu-Chr2 28319935 28322976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02948 6 504 Cytochrome P450 AT5G07990 47.337 1.74e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02948 K13083 - cave:132164054 720.694