Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu2g02917 | ATGAAGGTCAAAGTTATATCACGCTCCGTTGATGAGTTCACCCGAGAACGAAGTCAAGACCTTCAGAGGGTGTTCCGGAATTACGACCCCAGCCTTCGTCCTCAAGAGAAGGCGGTGGAGTATGTGCGAGCTCTTAATGCAGTGAAGTTGGATAAGATTTTTGCAAGACCATTTATTGGAGCATTGGATGGACATATAGATGCTATTTCGTGTATGACGAAGAACCCTAGCCAGTTGAAAGGGATATTCTCTGGTTCAATGGATGGAGATATTCGACTCTGGGATTTAGCATCAAGACAGACAGTTTGCCAGTTTCCTGGTCACCAAGGTGCTGTACGAGGTTTGACAGCATCTACTGATGGAAAAGTTCTTGTCTCCTGTGGAACTGATGCCTGTATCAGACTCTGGAATGTTCCTAATACTTCTCTTGTGGAGTCAGATGACTCAACCAAGAGCACTATTGAGCCAGCAAGTGTCTTTGTTTGGAAGAATGCTTTTTGGGGCGTTGATCACCAGTGGGATGGTGACCTTTTTGCCACTGTTGGTGCTCAAGTAGATATATGGAATCACAACAGGTCTCAGCCGATTAATAGTTTTGAATGGGGGACAGATACAGTAATTTCTGTCCGGTTTAATCCTGGAGAACCAAATCTTTTGGCCACCTCAGCTAGTGACAGAAGCATAATTCTGTATGATCTACGTATGGCTTCCCCTGTGAGAAAAATGATAATGATGACCAAAACCAATTCTATATGTTGGAATCCAATGGAACCCATAAATTTTACAGCTGCAAATGAAGACGGCAACTGCTATAGCTATGATACTAGGAAGTTGGATGAAGCTAAATGTGTTCATAAAGATCATGTTTCTGCAGTGATGGATATTGACTACTCACCAACTGGGCGAGAATTTGTCACTGGATCTTACGATAGAACAGTGAGACTTTTCCAGTATAACGGTGGTCACAGCAAAGAGATTTATCACACTAAGAGAATGCAAAGGGTATTTTGTGTCAAGTTCAGTGGTGATGGAAGTTATGTGATTTCAGGAAGTGATGATACTAACCTTAGAATTTGGAAGGCAAAAGCATCTGAGCAACTTGGAGTAGTAAGATATCTTCCTTGCTTCTTACATTACTTAGATTTGAGTGAAATAATTAATGTGTCAGAGCATATCCTTAGCATCATGTGGCGATGTTTATTTCATACAAAAATGAATCTCAGTTTTGTTGGTTTATATACGTACATTTTCTTTACATTTATTTATGATTACTTTGTGATCATGCCACAGATTCTTCCAAGAGAACGTAAAAAGCACGACTATCACGAGGCTGTAAAGAAACGCTATAAGCACCTCCCTGAGGTTAACAGGATTGCAAGACATAGGCACTTGCCAAGACCAATATTCAAAGCTTCTGCTTTAATGCGTGTTATGACTGATGCCAAGAAAAGGAAGGAAGATAAGAGGAAAGCTCACAGTGCTCCAGGGAGCATTACAACACAACCCTTACGGCGACGAAGAATTATCAAAGAAGTTGAGTAA | 1542 | 0.4105 | MKVKVISRSVDEFTRERSQDLQRVFRNYDPSLRPQEKAVEYVRALNAVKLDKIFARPFIGALDGHIDAISCMTKNPSQLKGIFSGSMDGDIRLWDLASRQTVCQFPGHQGAVRGLTASTDGKVLVSCGTDACIRLWNVPNTSLVESDDSTKSTIEPASVFVWKNAFWGVDHQWDGDLFATVGAQVDIWNHNRSQPINSFEWGTDTVISVRFNPGEPNLLATSASDRSIILYDLRMASPVRKMIMMTKTNSICWNPMEPINFTAANEDGNCYSYDTRKLDEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRLFQYNGGHSKEIYHTKRMQRVFCVKFSGDGSYVISGSDDTNLRIWKAKASEQLGVVRYLPCFLHYLDLSEIINVSEHILSIMWRCLFHTKMNLSFVGLYTYIFFTFIYDYFVIMPQILPRERKKHDYHEAVKKRYKHLPEVNRIARHRHLPRPIFKASALMRVMTDAKKRKEDKRKAHSAPGSITTQPLRRRRIIKEVE | 513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu2g02917 | 513 | Pfam | WD domain, G-beta repeat | 325 | 360 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | Pfam | WD domain, G-beta repeat | 100 | 137 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | Pfam | WD domain, G-beta repeat | 282 | 316 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | Pfam | WD domain, G-beta repeat | 61 | 95 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 328 | 360 | - | - | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 62 | 98 | - | - | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 285 | 317 | - | - | |
| Vimu2g02917 | 513 | MobiDBLite | consensus disorder prediction | 483 | 506 | - | - | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 328 | 369 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | Gene3D | - | 147 | 240 | IPR015943 | GO:0005515 | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 105 | 138 | - | - | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 105 | 146 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 285 | 326 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | PANTHER | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN | 1 | 512 | - | - | |
| Vimu2g02917 | 513 | Pfam | Sof1-like domain | 431 | 508 | IPR007287 | - | |
| Vimu2g02917 | 513 | Gene3D | - | 35 | 142 | IPR015943 | GO:0005515 | |
| Vimu2g02917 | 513 | SMART | WD40_4 | 319 | 360 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | SMART | WD40_4 | 192 | 232 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | SMART | WD40_4 | 55 | 95 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | SMART | WD40_4 | 98 | 137 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | SMART | WD40_4 | 278 | 317 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | SMART | WD40_4 | 235 | 274 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | CDD | WD40 | 59 | 360 | - | - | |
| Vimu2g02917 | 513 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 82 | 96 | IPR019775 | - | |
| Vimu2g02917 | 513 | PRINTS | G protein beta WD-40 repeat signature | 124 | 138 | IPR020472 | - | |
| Vimu2g02917 | 513 | PRINTS | G protein beta WD-40 repeat signature | 347 | 361 | IPR020472 | - | |
| Vimu2g02917 | 513 | PRINTS | G protein beta WD-40 repeat signature | 82 | 96 | IPR020472 | - | |
| Vimu2g02917 | 513 | FunFam | DDB1- and CUL4-associated factor 13 | 152 | 373 | - | - | |
| Vimu2g02917 | 513 | SUPERFAMILY | WD40 repeat-like | 21 | 360 | IPR036322 | GO:0005515 | |
| Vimu2g02917 | 513 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 124 | 138 | IPR019775 | - | |
| Vimu2g02917 | 513 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 62 | 104 | IPR001680 | GO:0005515 | |
| Vimu2g02917 | 513 | Gene3D | - | 241 | 379 | IPR015943 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu2g02917 | Vimu-Chr2 | 27689741 | 27702389 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu2g02917 | 59 | 319 | Eukaryotic Initiation Factors Gene Family | AT2G46290 | 20.702 | 3.57e-06 | 47.4 |