Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02904 ATGTCGCCCAGCTTCGTCTTCGACCCTCCCAGCGACGAAGAAATCGAACACTCTGAACGAGAAGAGGAAGAAGAAGACGAAGAAGAACCAGAGGAAGCTGAGTCAGGATCAGATTCTGACTCAGAAGAAGAGGGACGGCACAAAGAAGCGCGGGTTTCGAAGAAGAAAACGCAGTCTCCATGGGACTTCGCCAAATACACGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCCGTGGACGAGAAAATCTCCAAAGCTCTCCGACAACGTTCCACGCCGCTCGTTGCGGAGCTTGACCACAGCTCCGAGTCTGAACTTGACGAACAAGAAGATTATAAACCGGACGAAGAAGACGCAGAGGAGGGTTATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCATGCCGATTCCTTCCTGCAGCTTAATTTGTCTCGTCCTTTGCTCCGGGCTTGTGAGGCCCTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCATGTGTTCCATTGGCATTGTCTGGTCGTGATATATGTGGGAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACGCTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAATTGGCCGTCCAAGTTCACAGTATGATAGAAAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGTTGCTTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATTGACCATTTACGCAATGCTATGTCTGTTGATTTGGATGATCTTGCTGTTCTCATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGCCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAGCTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCTGCAACCTTGATTGAGGAAGTTGTCAGAATACGAAGAATGCGTGAAGTAAACCAGGAGGCCGTTCTTCTTGCAATGTGCTCAAAAACTTTTACCTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCAGCACATAGATTAAAGATTATATTTGGATTAGCTGGCATAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGTCTGGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAGATGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGCCCACGTGATCTTACTAGCTATGTTCATCGTGTGGGTCGGACTGCAAGAGCTGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGATCGATCACTTTTAAAAGCCATTGCCAAGAGGGCCGGTTCAAAGTTGAAAAGCCGCATTGTTGCTGAGCAATCTATACTTAAGTGGTCTCATATTATTGAGCAAATGGAGGATCAAATTGATGAAGTACTTCGAGAAGAGAGTGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGAACATAAGGACGAGATCTTTTCCCGTCCCAAAAGAACATGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCCAAAGCAGCTAAGGCATCCTCCCTAGAGAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGCGCCGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGCAGAAAGTTAGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGGTAACCAAGTAGAGGCCAAGGGGACGAATAAAAACGAAAAGGGTGGATTGTCACTTGTTGATCTTGCTTACAGACGGGCAAAAGCAGTGAAGGCTGTTAATAAGGCAGTAGATTCTGGCAAGATTGTGAAGAAGAGTCAGAAGAAATCTAGTAATGTTCCCAGAAAAACTCCCTCAAGGACAGAAGAGATGAGGGATCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAGAGGTGTTGGAGGAGGAAAGAAGGCGAAGAGTTCATTCAAAAGCAAGTCAAGGTATTAA 2250 0.46 MSPSFVFDPPSDEEIEHSEREEEEEDEEEPEEAESGSDSDSEEEGRHKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTPLVAELDHSSESELDEQEDYKPDEEDAEEGYGGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACVPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLIEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGIKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIEQMEDQIDEVLREESEERALRKAEMEATKAENMIEHKDEIFSRPKRTWFVTEKEKKLAAKAAKASSLEKNKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEEQDGNQVEAKGTNKNEKGGLSLVDLAYRRAKAVKAVNKAVDSGKIVKKSQKKSSNVPRKTPSRTEEMRDLFQTDMKDKKPKRRGVGGGKKAKSSFKSKSRY 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02904 749 MobiDBLite consensus disorder prediction 1 133 - -
Vimu2g02904 749 Coils Coil 580 600 - -
Vimu2g02904 749 CDD DEADc_DDX27 156 351 - -
Vimu2g02904 749 CDD SF2_C_DEAD 378 494 - -
Vimu2g02904 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 350 IPR014001 -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 730 749 - -
Vimu2g02904 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 524 IPR001650 -
Vimu2g02904 749 Gene3D - 111 352 IPR027417 -
Vimu2g02904 749 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 137 703 - -
Vimu2g02904 749 Coils Coil 638 658 - -
Vimu2g02904 749 Pfam Helicase conserved C-terminal domain 382 485 IPR001650 -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 706 729 - -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 591 667 - -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 604 622 - -
Vimu2g02904 749 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 296 304 IPR000629 -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 67 90 - -
Vimu2g02904 749 Gene3D - 372 708 IPR027417 -
Vimu2g02904 749 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Vimu2g02904 749 MobiDBLite consensus disorder prediction 40 58 - -
Vimu2g02904 749 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Vimu2g02904 749 MobiDBLite consensus disorder prediction 15 39 - -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 106 125 - -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 637 655 - -
Vimu2g02904 749 SMART helicmild6 400 485 IPR001650 -
Vimu2g02904 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 505 IPR027417 -
Vimu2g02904 749 MobiDBLite consensus disorder prediction 685 749 - -
Vimu2g02904 749 SMART ultradead3 164 366 IPR014001 -
Vimu2g02904 749 Coils Coil 523 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02904 Vimu-Chr2 27503373 27511131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02904 133 502 Eukaryotic Initiation Factors Gene Family AT3G13920 32.976 1.20e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02904 K13181 - gmx:100776684 1132.47