Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02899 ATGAGTTTATTTCCTTGTTGTGCATCACAAAAGAGGCTCAACAAGAAGACATTGAAGAAGAGCATTAAGAAAGAAAAAGAATACGAAGATAGAAGAAGTGTCACCTCATTTTCTAACATCTCTTTTAAATCAGATAGTGGGAAGAGAAAGTTCATAACAGATGAGATAGCAAGGCTTGGGAAAGGAAACATTAGATCTAAGATAATTTCTTATCGTGAGATATGTGCTGCAACTCAGAACTTTCACCCTGACAACATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGATACCTTAAAAGCACTAATCAAACTGTTGCAGTGAAGCAACTTGACAGAAATGGATTTCAAGGAACCAGAGAATTTCTTGTAGAGGTTTTAATTTTGAGTCTTTTGCACCATCCTAATCTTGTCAACTTGATAGGGTATTGTGCTGAAGGAGAACATAGAATTTTGGTGTATGAATATATGGTAAATGGTTCTCTAGAAGATCACTTACTTGTGGCAGCAATGTGTCTCCAAGAAGAAGATGAAACTCGACCTTTAATCAGTGATGTAGTTACAGCAGTTGAATTTTTGGCAAGAAAGAGAGTAGAAGAGAATGAACCACAACCCACCAAAAAAATTTCTTCTACTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAGTAATGAACACAACCAATCTCATAAAGATCGAGACGATAATCACAATGATCAGAACCAAGATGAAGAAAAGAAGAATTGA 750 0.3613 MSLFPCCASQKRLNKKTLKKSIKKEKEYEDRRSVTSFSNISFKSDSGKRKFITDEIARLGKGNIRSKIISYREICAATQNFHPDNMIGEGGFGRVYKGYLKSTNQTVAVKQLDRNGFQGTREFLVEVLILSLLHHPNLVNLIGYCAEGEHRILVYEYMVNGSLEDHLLVAAMCLQEEDETRPLISDVVTAVEFLARKRVEENEPQPTKKISSTEEEEEEEEEDSNEHNQSHKDRDDNHNDQNQDEEKKN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02899 249 Coils Coil 210 230 - -
Vimu2g02899 249 Gene3D Phosphorylase Kinase; domain 1 40 157 - -
Vimu2g02899 249 FunFam Serine/threonine-protein kinase CDL1-like 52 157 - -
Vimu2g02899 249 PANTHER OS07G0668900 PROTEIN 168 207 - -
Vimu2g02899 249 SUPERFAMILY Protein kinase-like (PK-like) 63 198 IPR011009 -
Vimu2g02899 249 ProSiteProfiles Protein kinase domain profile. 81 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02899 249 MobiDBLite consensus disorder prediction 198 249 - -
Vimu2g02899 249 Pfam Protein kinase domain 82 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02899 249 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Vimu2g02899 249 MobiDBLite consensus disorder prediction 225 249 - -
Vimu2g02899 249 MobiDBLite consensus disorder prediction 198 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02899 Vimu-Chr2 27440855 27443771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02899 162 222 Glycoside Hydrolase AT3G07070 41.176 3.44e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu2g02899 Pkinase 8.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02899 - - gmx:100790474 259.61