Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02888 ATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGGTACTCAAAGGAAGGCTCAAGGTGGATGCTGCTAGGAAATATTTTCAGCAACTGATTAGCGCTGTTACTGCAACCGAAAACCAAGAACCAGCTCCCCTGAATGCTGATGGAATACTTGAAAAGTGCGAGAATGATGGTCCACCTTTTGCAGAGTCAAAGCATGAATTGACCACGCCTTGTAACTTGAATGCTTTTGCTATTATCTCCTTCTCGACTGAGTTTGATTTATCTGGTATGTTTGAGGACACTGTTCCCATGAAAGAGATGTGGTTCATGTCAAATAAGCCTAATCTCTAA 333 0.4264 MEHAKGGELFNKVLKGRLKVDAARKYFQQLISAVTATENQEPAPLNADGILEKCENDGPPFAESKHELTTPCNLNAFAIISFSTEFDLSGMFEDTVPMKEMWFMSNKPNL 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02888 110 ProSiteProfiles NAF domain profile. 69 93 IPR018451 GO:0007165
Vimu2g02888 110 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 39 - -
Vimu2g02888 110 Pfam NAF domain 71 108 IPR004041 GO:0007165
Vimu2g02888 110 Gene3D Kinase associated domain 1, KA1 71 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02888 Vimu-Chr2 27260488 27260820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02888 1 35 CBL-interacting serine-threonine protein kinases AT4G18700 80.000 1.85e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02888 K07198 - gmx:100811923 103.605