Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02870 ATGAAAGCAGCAGTGGTTGTACATCAACTTGGCAACCTAATTTCCAACAGAAGTATTTTGGAGAAACTCAAAACTGATCTCGAGACTCTGCAAGATCAAAGGAAAAAAGTGCAAGAAAATCTTATTTGGGAAGATGAAGAATTCCAGACTCAAAGTGAGTGGGTCAAAAGAGTGGATAAGATTCTTGGACAAGGGGATAAATTATTGAACTCCTATGAAGGCAAAAGTACTTGCACAAATATTCTTTTGCGGTACAAGATTGGTAAACAATCAAGAAAGATGCAACCAGAGATTTTAGCATTAATTCTTGAAGGAGACTCTCATGTATCAGCGAAAACACGAAAACATTACGAAAGACCAGCATCAAGAGATGAAACGATAGGTGATATTATGGAAGCCCTAAAGAACCCTGATATCCAAGCAGTTGGAGTATGGGGGCTGGGTGGTTTAGGCACAACCTCATTAGCCGAAAACATTAGAAAGAAAGCAAAAGAACAGAAATTGTTTGATGCAATGGTTTTCATAACTGTAACTGATAAACCAAATCAGGAGCAAGTTCAAAATGCTATTGCAGATGAATTGGGAGTGCAGTTTACCAATGGAGAAAGTCTTGTGAAAAGAAGAAACAAATTGCGTCAGAGAATAAAAAAAGAGCAAAGTACTCTCATCATAGTTGATGATACATGGGGGGAATTGAACCCAGAAGAATTTGACTTGGAGGAATTTGGAGTTCCTCCGGGTAATGAACATGAAGGGTGCAAAGTATTGGTGACTTCAGGAAATTTGAATTTCATACAATATTTGAAGGGTGCCTCTAAGCTTAATAAAGTGTTTCAATTAGAAGAATTACAAAAAGAAGAAGCTCGGATGCTGTTTGAGAAGATGGTTGGAAGTTTTGATGAAGATCAAAGTTTCATTGTAGAAGAAATAGTGAGAAGTTGTGAAGGTTCCATTTCTTTAATTTATGCTCTAGCAAAGGCATTAGAAAATAAGGGCATAGATGCCTTGATGCAGCTCAAGGAAAATATTTCACCAGCAAAACTATTGTCCTATTGTTTGGAAGAAAATGAGGAACACAAAGCATTGTTGTATCTTCTTACTATTAGGGAAAGAAGATTTATTAACAGTTATAGCATCTACATAGACATGTGGACAGGTGTATTCAAAAATCTGGAAACAGCAGATTCTGCAAGAAAAAAGCGTGAGTCATTGATTAGTGATCTGAAGGCCTATGGTCTTGTGGTTGAAAATGGAAAGGACTGGGTCAAAGTAGATGACTACATATATCAGACTGCTTATCGAATGGCCCAACATGATCGAAGAGCTTCAGTGATTTCGAGAGAATGGCCACCTGAAGAATTGCTAACAGATCTTCACTTCTGCAACTTACATCCTGTTGGTGATTTGAAGCTTCGCGCAACGTTGCAATGTCCAAACTTGAAACATCTTCTGATAAGTAGGGAAAATTCCACAATAGATGTTCCAAATTCCTTTTTTGAGGAGACTAAACTTCTGAAAGTGCTAGATTTTGTTTCCTTTCATTGCCCAAATCTGCCTCATAGTTTTGTTGTTTTAAAGGACCTTGAAGCATTATCCATGTATAAATGTGTATTGGGAGACATTACAGAAGTTTGTGAGCTCACAAATCTGAGAATGCTAGGCCTCCTTGGAAGTAGTATCCAACAATTGCCTGCGCAAATTGTAAAGCTTCAGAAGTTGTTATTCTTGGATTTAAGAGACACAAATCTAAAAGTGATTCCACCCAATGTCCTGTCCAAATTGGCAAGCTTGGAAGAATTATATTTGAGAAACTCCTTCTGTAATTGGGAGATTGAAATGTCTACCAGTGAAAACAAGAATGCAAGCATGAAAGAGCTTACAGACTTGGAACACTTGGCATACATAGAAGACATGTATGTTCCTGATCCGCGGGCATGGCCTGTGGACTTGTTCTTTGGAAACCTAAGATCATATACAATTTTCATTGGTGAAGGGTGGGACCGAGCACATTATGGTGATCATGAATTGAAGACATTGAAACTGAAGCTGAACAGGAGGTTTCAGTCAGAGAATGGAATAAAAAAGATGCTGAAAGAAGTTCAGGTTTTGTACTTGGATACAATGAATGGTGTCCAGAATGTTGTTAATGATATGGAGTGTGATGGGTTTCCACAACTGCAGTCTCTTTTCATTCAACACAATGCTGAAGTCAAATGCATAGCCACAGGGTCAGGTATCGATCCTCTTGATACCTTCCCGAACTTGGAGTCACTGTCTCTCACCATTCTAAGCAATTTGGAGTACATATGCCATGCTGGTTCCTTAACTGATAAATCTTTCTTCAAACTGAGAGTCATCAAAATAGAGAAATGCAATGCAATGCGATGTCTCTTCTCAGTATCAATGATCGAAGGTATTCCTCATATTGCTACTTTGGAAGTTTCACAGTGCATATCCATAAAGGCAATTGTGCTATTTGAAGGTGCAGAGAATCGTCCCATAGAATTTCCTGAATTATGCTCTCTAACCTTACAAGGACTCCCAGCATTAATCAGTTTCTGCTCAAGTGAAGGATCCTCTTCTGCTACACTTTTCCATGACAAGGTTTCTTGCCCTAAGCTGGAGACAATGGTGATTTCCGAGGTTAGTGAATTGACAACAATATGGAATGAAGAGTATGATGCTGAAAATTCATTTGGGAAACTGAAAAACGTAATTATCAAAGATTGTGAGAAATTGAGAACTGTTTTTCCAGTTAATCTTTCCAAAAATCTTGATAATTTGAAAACGTTAGAGGTTAGAAATTGCCGTTTAATGACAAGCATTTTCACTGTGATGAGGCAAGATAGCACAAAACCAGGGCTTCAATTGAGCATTCCAATGATTGAAATAACTTTAACTGGTCTTCCCAAATTGGAGTATGTGTGTGTTACTACAGGATTTGAAGCCTTGAAGAAAAAATTCGAAGAAGAATGGTATGCTGGCCTTCCCGGATTATCAGTTGTCGTTTTCATCAGTGTGTTGCCTCAAGCTATAGGGCTCCTTCGTTTCAGGGCTGCCGATTTAGGTACCACTATTGATTGCACCACTGCCTCTGAAGCACTTGCTTTAGAGCTCTGTTGGTGTCCTAGGTGTAGGATCTCTGCTCATGCACTAGGTTTAGGAACCCGCTCTCACTCGCTTCGTTGA 3189 0.3879 MKAAVVVHQLGNLISNRSILEKLKTDLETLQDQRKKVQENLIWEDEEFQTQSEWVKRVDKILGQGDKLLNSYEGKSTCTNILLRYKIGKQSRKMQPEILALILEGDSHVSAKTRKHYERPASRDETIGDIMEALKNPDIQAVGVWGLGGLGTTSLAENIRKKAKEQKLFDAMVFITVTDKPNQEQVQNAIADELGVQFTNGESLVKRRNKLRQRIKKEQSTLIIVDDTWGELNPEEFDLEEFGVPPGNEHEGCKVLVTSGNLNFIQYLKGASKLNKVFQLEELQKEEARMLFEKMVGSFDEDQSFIVEEIVRSCEGSISLIYALAKALENKGIDALMQLKENISPAKLLSYCLEENEEHKALLYLLTIRERRFINSYSIYIDMWTGVFKNLETADSARKKRESLISDLKAYGLVVENGKDWVKVDDYIYQTAYRMAQHDRRASVISREWPPEELLTDLHFCNLHPVGDLKLRATLQCPNLKHLLISRENSTIDVPNSFFEETKLLKVLDFVSFHCPNLPHSFVVLKDLEALSMYKCVLGDITEVCELTNLRMLGLLGSSIQQLPAQIVKLQKLLFLDLRDTNLKVIPPNVLSKLASLEELYLRNSFCNWEIEMSTSENKNASMKELTDLEHLAYIEDMYVPDPRAWPVDLFFGNLRSYTIFIGEGWDRAHYGDHELKTLKLKLNRRFQSENGIKKMLKEVQVLYLDTMNGVQNVVNDMECDGFPQLQSLFIQHNAEVKCIATGSGIDPLDTFPNLESLSLTILSNLEYICHAGSLTDKSFFKLRVIKIEKCNAMRCLFSVSMIEGIPHIATLEVSQCISIKAIVLFEGAENRPIEFPELCSLTLQGLPALISFCSSEGSSSATLFHDKVSCPKLETMVISEVSELTTIWNEEYDAENSFGKLKNVIIKDCEKLRTVFPVNLSKNLDNLKTLEVRNCRLMTSIFTVMRQDSTKPGLQLSIPMIEITLTGLPKLEYVCVTTGFEALKKKFEEEWYAGLPGLSVVVFISVLPQAIGLLRFRAADLGTTIDCTTASEALALELCWCPRCRISAHALGLGTRSHSLR 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02870 1062 Gene3D - 106 275 IPR027417 -
Vimu2g02870 1062 PRINTS Disease resistance protein signature 141 156 - -
Vimu2g02870 1062 PRINTS Disease resistance protein signature 215 229 - -
Vimu2g02870 1062 PRINTS Disease resistance protein signature 923 939 - -
Vimu2g02870 1062 Coils Coil 20 47 - -
Vimu2g02870 1062 Pfam Leucine rich repeat 548 604 IPR001611 GO:0005515
Vimu2g02870 1062 Gene3D Ribonuclease Inhibitor 835 952 IPR032675 -
Vimu2g02870 1062 Pfam NB-ARC domain 124 364 IPR002182 GO:0043531
Vimu2g02870 1062 SUPERFAMILY L domain-like 444 943 - -
Vimu2g02870 1062 Gene3D Ribonuclease Inhibitor 454 823 IPR032675 -
Vimu2g02870 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 343 IPR027417 -
Vimu2g02870 1062 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 870 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02870 Vimu-Chr2 27006209 27018828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02870 138 301 WRKY Transcription Factor Family AT5G45050 26.347 2.37e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02870 - - vun:114188479 1514.59