Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02866 ATGGCTTTTTTGATCCGTCTGAAATTGTTCTCAATGCTTATGTTCTACTTACTTGGCACCCTTAACATTTTAGCAACTGAAACAGCCTCAACTTTCAGGCACTATGATTGCAAATTCTTGCCAAAGTTTAGTCCCAAAAGTAGTTACCAATTGAATCTGAATAAACTCTTATCTAAACTTACATCCAAAGTTAACACCACCAACTATTACAACACCACAGTGAGTGGAAAAAACAAACAAGACACTGTCTATGGCCTCTTCATGTGCAATGGATATATGGAGAAATGTGGAGAATGTGTGAATACTTCAATCCAGACACTTAAATCAAAGTGTGTCTTCAACAAAGAGGCTATAATTTGGACTCATGAATGCATGGTTCGCTACTCAGACAGGTTTTTCTACAACACTACTGAGAAATCGCCATCATGGTGTGTTAAGAACAGTGAGGATTATGAGGGGGAATTGGATATTTTCAACAGAATGCTGAGTTCCTTGATGGAGGATCTTCTGACTGAAGCCAGTGAAGCTCAAATGGGTTCTGTTAAATTTGCTGTGAAGAAAATAACATTCTCTCAGGACAAGCACTTTTTTGGCTTTGCTCAGTGCATGCCATACCTCTCCAAGGAAAATTGCAGAAGGTGCCTTAGGGATGCCATGAATTTTCTTCAAACATGTGCAAAAGGCAAGATAGGAGGAAGAGTTATATATCCGAGCTGTATTGTTAGATATGATCATTATCTGTTTTTCCCGCTTCTTAGAGGATTGAACTCTCTGCAATTTGAATTGAGTACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGAGCAGTATACAAGGGTGTGTTTTCAAATGGACTTGAAATAGCAGTAAAGAGGCTAAAGAAAAATTCCAGTCAAGGAGCTACAGAATTCAAGAAAGAGTTTGTGAATTTATTATTGTTTTGCAGTGGCTACATGTCTCCTGAATATGCAATGCTTGGCCAATTTTCTATGAAATCTGATGTTTTTAGTTTTGGAGTTATAATTCTCGAAATAATCAGTGGGAAGAGAAACGTTGATGGGAATGGAAAAGATTTGGATGATCTCTTGAGCCATGCTTGGAAGAAGTGGAAGAAAAACAAAGTACTTGAATTGTTGGATCCCTCATTGCCACACTCCTTCTCTGAAACAGAAATCAAAAAGTGTGGAAACCCAGATCAGAGGCCTATCATGGCAAAAATTGCTTTGTATATTAGCTGTGATCAAGTTGGAAAACTACCTTTACCTCAAGAACCAGCATTTCTTATGCTGAGGTACGAGATTAGATTACCCATCCGAGTCCGATCACCTAACCCGTTCGCCAAAGTCCTCTCTCCAGTACCGATGGGTGGTGATTTGGAAGAAAACACTCTGACGCTCAAGTTAGCTAGGTCACTGATCAGAGATGAGTGA 1458 0.3903 MAFLIRLKLFSMLMFYLLGTLNILATETASTFRHYDCKFLPKFSPKSSYQLNLNKLLSKLTSKVNTTNYYNTTVSGKNKQDTVYGLFMCNGYMEKCGECVNTSIQTLKSKCVFNKEAIIWTHECMVRYSDRFFYNTTEKSPSWCVKNSEDYEGELDIFNRMLSSLMEDLLTEASEAQMGSVKFAVKKITFSQDKHFFGFAQCMPYLSKENCRRCLRDAMNFLQTCAKGKIGGRVIYPSCIVRYDHYLFFPLLRGLNSLQFELSTIQEATNKFSDDNKIGEGGFGAVYKGVFSNGLEIAVKRLKKNSSQGATEFKKEFVNLLLFCSGYMSPEYAMLGQFSMKSDVFSFGVIILEIISGKRNVDGNGKDLDDLLSHAWKKWKKNKVLELLDPSLPHSFSETEIKKCGNPDQRPIMAKIALYISCDQVGKLPLPQEPAFLMLRYEIRLPIRVRSPNPFAKVLSPVPMGGDLEENTLTLKLARSLIRDE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02866 485 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 17 251 - -
Vimu2g02866 485 Gene3D Phosphorylase Kinase; domain 1 251 321 - -
Vimu2g02866 485 ProSiteProfiles Gnk2-homologous domain profile. 31 133 IPR002902 -
Vimu2g02866 485 SMART tyrkin_6 272 420 IPR020635 GO:0004713|GO:0006468
Vimu2g02866 485 SUPERFAMILY Protein kinase-like (PK-like) 268 417 IPR011009 -
Vimu2g02866 485 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Vimu2g02866 485 Gene3D - 30 133 IPR038408 -
Vimu2g02866 485 Gene3D - 142 248 IPR038408 -
Vimu2g02866 485 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
Vimu2g02866 485 Gene3D Transferase(Phosphotransferase) domain 1 322 422 - -
Vimu2g02866 485 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Vimu2g02866 485 Pfam Salt stress response/antifungal 149 246 IPR002902 -
Vimu2g02866 485 Pfam Protein tyrosine and serine/threonine kinase 326 363 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02866 Vimu-Chr2 26901522 26905933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02866 326 438 Receptor kinase-like Gene Family AT4G05200 39.837 3.78e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g02866 PK_Tyr_Ser-Thr 1.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02866 - - pvu:PHAVU_006G006800g 508.449