Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02862 ATGCTAATTCGGATGTGGGCGTTGTTTGGTGACTTGGTTTCTACCACTGGCATAAGCTGCACTACTGTTGGGGATAGGCATATAAAACCTTGCTTGGTTATTGCATCAGTTATCCGTGTTGATCAAAATGGTAGCTATGTGTTTTTGCCGTCCAGTTCAGGAGGACTTGCTGGTGGGGCTATTGCTGGAATAGCTGTTGGAGTTGTGGCAGTTCTTCTGGTATTAGGAGTTGTTATATATTTCAGGATATTCCGGAAGAAGATAAAGAAGGAGGAACTTTCACGAGATTCTAGTGCACTCTTTGCTCAAGATGGGAAGGATGAAGCTTCCCGTAGTAGTGCGCATGAAACTTTAGGACCTGGTGGTCCTACCGCTATCACCGGCATAAAAGTGGACAAATCGGTGGAATTCACATACGAGGAACTAGCAACTGCCACAGATAACTTTAGTTTGGCTAATAAAATCGGTCAAGGAGGTTTTGGGTCAGTCTATTATGCAGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCTTGACACGTGTTCATCATTTAAACCTGGTGCGGCTGATTGGGTATAGCATTGAGGGATCTCTTTTTCTTGTCTATGAATACATTGAAAATGGAAACCTAAGTCAACATCTGCGTGGTTCAGGTAGTAGAGAACCACTGCCATGGGCTACTCGTGTTCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGCACACAGTACCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTTCGGGGCAAGGTTGCTGATTTTGGATTAACCAAACTTACAGAAGTTGGAAGTTCATCACTTCCCACGGGTCGTCTTGTTGGAACATTTGGATACATGCCACCGGAGTATGCTCAATATGGGGATGTTTCTCCCAAAGTAGACGTGTATGCTTTTGGAGTTGTTCTTTATGAACTCATTTCGGCTAAGGAAGCAATTGTCAAGACAAACGACTCTGCTACCGACTCAAAGGGCCTAGTAGCTCTGTTTGATGGAGTTCTTGGTCAGCCGGATAACACTGAAGATCTCATCAAACTAGTTGATCCAAGGCTTGGGGATAACTACCCAGTTGACTCTGTCCGCAAGATGGCACAACTAGCCAAAGCCTGTACACAAGACAATCCTCAACTCCGTCCAAGTATGAGATCTATTGTGGTTGCGCTAATGACACTTTCTTCAACTACAGACGAGTGGGATGTTGGTTCCTTCTATGAAAATCAAAATCTTGTGAATCTAATGTCAGGAAGATAG 1350 0.4304 MLIRMWALFGDLVSTTGISCTTVGDRHIKPCLVIASVIRVDQNGSYVFLPSSSGGLAGGAIAGIAVGVVAVLLVLGVVIYFRIFRKKIKKEELSRDSSALFAQDGKDEASRSSAHETLGPGGPTAITGIKVDKSVEFTYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGSREPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTNDSATDSKGLVALFDGVLGQPDNTEDLIKLVDPRLGDNYPVDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDEWDVGSFYENQNLVNLMSGR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02862 449 ProSiteProfiles Protein kinase domain profile. 149 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02862 449 Gene3D Transferase(Phosphotransferase) domain 1 220 441 - -
Vimu2g02862 449 Gene3D Phosphorylase Kinase; domain 1 134 219 - -
Vimu2g02862 449 SUPERFAMILY Protein kinase-like (PK-like) 131 421 IPR011009 -
Vimu2g02862 449 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 42 435 IPR044812 GO:0019199|GO:0045087
Vimu2g02862 449 CDD STKc_IRAK 155 418 - -
Vimu2g02862 449 FunFam PTI1-like tyrosine-protein kinase 3 220 435 - -
Vimu2g02862 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vimu2g02862 449 FunFam LysM receptor kinase 2 128 219 - -
Vimu2g02862 449 Pfam Protein tyrosine and serine/threonine kinase 151 420 IPR001245 GO:0004672|GO:0006468
Vimu2g02862 449 SMART serkin_6 149 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02862 449 ProSitePatterns Protein kinases ATP-binding region signature. 155 177 IPR017441 GO:0005524
Vimu2g02862 449 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02862 Vimu-Chr2 26863258 26871786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02862 41 449 Receptor kinase-like Gene Family AT3G21630 64.563 2.65e-177 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu2g02862 PK_Tyr_Ser-Thr 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02862 K13429 - gmx:100777781 696.041