Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02844 ATGGTTGAATCTGAAATTGTGTTTCCATCATCCTCTTCTCTTTCTTCTTTTGACCGATCCACTGATACTGATAGTGTTGCTGGTTCACCCTCTCTGCAGAAACCATCATCTTCAACAACTCGTCACCACCATCTATCAAGAAAGAAAAAACTTGGTAGACCCGTAGGTTCTAAGAACAAGCCAAAACCACTACTTGTGATTGACAAAGCCAATAAGAGTGTTGTAAAACCTGTGTTCATTGAAGTTCCTGAAACCTATGATGTGATTAGGACAATTGTTAAATTCGCTCGTCATCACCAAGTTAGCATCATAGTGCTGAACGCATCAGGAACTGTTTCCAGTGTCACTATTCGTAACTCTCACTATCATGCTTCTCCTTTCACTCTTTATGGACCTTTCAAATTAATTTCCCTCACTGGTACTTACATACACCCTCATTGTTCTTTTAGCATTTCTGTTTCTGGAATCAAAGAACAATGCTTCATCGGAGGAGTTGGAGGAAAAGTTATTGCAGAGAATGAAGTTATGGTGGCAGCTGTTATTGTGAACAAATTTTAA 558 0.3907 MVESEIVFPSSSSLSSFDRSTDTDSVAGSPSLQKPSSSTTRHHHLSRKKKLGRPVGSKNKPKPLLVIDKANKSVVKPVFIEVPETYDVIRTIVKFARHHQVSIIVLNASGTVSSVTIRNSHYHASPFTLYGPFKLISLTGTYIHPHCSFSISVSGIKEQCFIGGVGGKVIAENEVMVAAVIVNKF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02844 185 CDD DUF296 76 178 IPR005175 -
Vimu2g02844 185 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 179 - -
Vimu2g02844 185 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 180 IPR005175 -
Vimu2g02844 185 Gene3D - 75 185 - -
Vimu2g02844 185 ProSiteProfiles PPC domain profile profile. 72 185 IPR005175 -
Vimu2g02844 185 MobiDBLite consensus disorder prediction 1 39 - -
Vimu2g02844 185 MobiDBLite consensus disorder prediction 40 56 - -
Vimu2g02844 185 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 182 IPR014476 GO:0003680
Vimu2g02844 185 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02844 Vimu-Chr2 26538580 26539170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02844 38 184 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.792 8.43e-21 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02844 - - vun:114188375 310.071