Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02840 ATGGGTTTGACAGTGGAGAGGTTTGAGGAGAAGATGGTGTTCTCTTTTGAGTCTCAGAAATCAGTGCCAGCACCTTTCCTCACAAAGACATATCAACTTGTTGATGATCCTCTCACTGACCACATTGTTTCATGGGGTCAAGATCAAACAACTTTTGTTGTCTGGAGACCTCCTGACTTTTCCAGAGATCTTCTTCCCAACTATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTTCTGATAGGTGGGAGTTTGCCAATGAGTACTTCAAAAAAGGAGCTAAGCACCTTTTGTCTGAAATACAGAGGAGAAAAACACCTCACCAACATCATCACCAGATTCTTCAACAAGATCAAACTCTCTGCTGGCTTGATACTCCTCTTTCATCTCCAAAACAAAGCACAGACATTCTAACATCCCTTTCTGAAGACAACCAAAGACTAAGGAAAAAGAACTTCATGCTCTTGTCAGAACTTAGTCACATGAAGAGTTTGTACAATGACATCATATATTTCATCCAAAACCATGTAAAACCTCCACCACCCTTTGAACAAAGAACCAGCACTGCCGTTCCAAAGCTGGTGGACAAGTCCTTGTTCACTTCTTCTGAAGAATCAAACAGTTCTGTTAAGCTCTTTGGGGTCCTTCTAAGTGGCACAAAGAGATTGAACCCAGATAACATTAATTGA 723 0.408 MGLTVERFEEKMVFSFESQKSVPAPFLTKTYQLVDDPLTDHIVSWGQDQTTFVVWRPPDFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVSDRWEFANEYFKKGAKHLLSEIQRRKTPHQHHHQILQQDQTLCWLDTPLSSPKQSTDILTSLSEDNQRLRKKNFMLLSELSHMKSLYNDIIYFIQNHVKPPPPFEQRTSTAVPKLVDKSLFTSSEESNSSVKLFGVLLSGTKRLNPDNIN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02840 240 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02840 240 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 199 IPR027725 -
Vimu2g02840 240 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02840 240 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Vimu2g02840 240 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02840 240 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02840 240 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02840 240 Gene3D - 17 117 IPR036388 -
Vimu2g02840 240 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g02840 240 FunFam Heat stress transcription factor B-4 18 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02840 Vimu-Chr2 26343955 26344770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02840 10 193 HSF AT1G46264 59.091 6.01e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu2g02840 HSF_DNA-bind 5.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02840 K09419 - gmx:100806150 385.185