Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02835 ATGGGCAACTGTTGCTCTGGCAACGCTGCCGATGGCCCGGCTGACATGGGTGCCGCAGATGACAAGGGAGAAACCAACCAACAAAGCATTCGTTCAGACAGCAACAACAATGATAATGCCGTCGATAACCCTGCCACCACCACTACCACCCCACCGACATCGACGCCGCCACCTACCGTGACGTCACCTCCTTCGAAATCATCAAAACCGGGCGCCATGGGCCCTGTCTTGGAGCGGCCGATGGAGGACGTGAGAGCAACGTACACCATTGGGAAAGAGCTAGGGAGAGGGCAGTTTGGTGTGACGCATTTGTGCACGGACAAAGTAACTGGTGAACAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTTGTGAGCAAGGAGGATATAGAAGACGTGAGAAGAGAGGTGCAAATCTTGCACCATCTCTCAGGGCAACCTAACATTGTGGAACTTAAAGGTGCCTATGAGGATAAACAATCGGTCCATTTGGTCATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATCGTATCATTGCCAAAGGCCATTATACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTCCAGATTGTTCACACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAGCAAGGATGAAAATGCACCCCTCAAGGCCACAGATTTTGGTCTTTCCGTTTTCTTCAAAGAAGGAGAAATGTTCAAAGACATTGTGGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCGGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGTAACATGTTGAATTCAGATCCCAAAGAAAGATTTACAGCAGCTCAAGTTTTAGATCATCCATGGATCAAGGAGGACGGAGAAGCACCTGATAAACCACTTGACAATGCTGTATTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGAACAAAGCTTACAGAACAAGAAGTTAAGCAGTTGATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCATGATGGCAGGGACATCAAGGAAATCCTTGTAGAAGTCGATGGAGATAATGATGGGCGAATTAACTATGATGAGTTTGTGGCAATGATGAGAAAAGGAAATACAGAAGCTGCAACAAGGAAGAGGCGTGAGTCAACTTTCTAA 1629 0.4543 MGNCCSGNAADGPADMGAADDKGETNQQSIRSDSNNNDNAVDNPATTTTTPPTSTPPPTVTSPPSKSSKPGAMGPVLERPMEDVRATYTIGKELGRGQFGVTHLCTDKVTGEQFACKTIAKRKLVSKEDIEDVRREVQILHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGEMFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSNMLNSDPKERFTAAQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILVEVDGDNDGRINYDEFVAMMRKGNTEAATRKRRESTF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02835 542 ProSiteProfiles EF-hand calcium-binding domain profile. 500 531 IPR002048 GO:0005509
Vimu2g02835 542 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Vimu2g02835 542 Pfam EF-hand domain pair 463 526 IPR002048 GO:0005509
Vimu2g02835 542 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Vimu2g02835 542 CDD STKc_CAMK 88 345 - -
Vimu2g02835 542 SMART efh_1 500 528 IPR002048 GO:0005509
Vimu2g02835 542 SMART efh_1 465 493 IPR002048 GO:0005509
Vimu2g02835 542 SMART efh_1 429 457 IPR002048 GO:0005509
Vimu2g02835 542 SMART efh_1 393 421 IPR002048 GO:0005509
Vimu2g02835 542 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Vimu2g02835 542 FunFam calcium-dependent protein kinase 1 174 353 - -
Vimu2g02835 542 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02835 542 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02835 542 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Vimu2g02835 542 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Vimu2g02835 542 MobiDBLite consensus disorder prediction 1 81 - -
Vimu2g02835 542 MobiDBLite consensus disorder prediction 50 64 - -
Vimu2g02835 542 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Vimu2g02835 542 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Vimu2g02835 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vimu2g02835 542 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Vimu2g02835 542 SUPERFAMILY EF-hand 386 527 IPR011992 -
Vimu2g02835 542 ProSitePatterns Protein kinases ATP-binding region signature. 94 121 IPR017441 GO:0005524
Vimu2g02835 542 Gene3D - 354 532 - -
Vimu2g02835 542 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Vimu2g02835 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 521 - -
Vimu2g02835 542 MobiDBLite consensus disorder prediction 22 49 - -
Vimu2g02835 542 FunFam Calcium-dependent protein kinase 1 354 529 - -
Vimu2g02835 542 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02835 542 SUPERFAMILY Protein kinase-like (PK-like) 74 374 IPR011009 -
Vimu2g02835 542 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Vimu2g02835 542 FunFam Calcium-dependent protein kinase 1 90 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02835 Vimu-Chr2 26277421 26280585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02835 1 542 EF-hand Containing Proteins AT5G12180 78.782 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu2g02835 Pkinase 2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02835 K13412 - gmx:100781355 922.154