Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02820 ATGGCAGCGTGCTTGAATCCACCTAGGCTATCTACCACTGAAGATGACTCTGTGATACTCTTCTCAACTTCTAATTCTCCTGAGGAATCCATTAGTGCTTCTTCTTCCTCTTTCCACCACTCACCGCCACCATCACAGCAACAATTCAGAACTGCATATAAACTTTCTGTGAGAAATCTCTCCTACACTTTGCAGCCTAACAAGAGAACTTTCCTTTCATTTTGTCACCAGAGTAAAAAACCAGAGCCCTTAAGTATACTCAACTCAATCTCTTTTGTTGCCAGAAGTTCTGAGATTGTTGCTGTGGCTGGTCCTAGTGGAACAGGAAAGTCTACCCTTCTGCGAATCATGGCAGGAAGGGTAAAAGATGAAGACTTTGATCCTAAAAGTATTTCAATCAATGATCAGCCTATGACTAGTCCAGCTCAGTTGAGAAAGACATGCGGCTTTGTGGCACAAGAGGACAATTTGCTTCCTATGCTGACTGTGAGAGAAACTTTGTTGTTCAGTGCAAAGTTTAGGCTAAAAGAAATGACCCCAAAAGATAGAGAGTTGAGGGTAGAAAGCTTGTTGCAAGAGCTAGGACTTTTACATGTTGCTGATAGTTTTGTTGGGGATGAAGATAATAGAGGGATATCTGGTGGAGAGAGGAAAAGGGTGTCAATTGGAGTTGACATGATTCACAATCCTCCAATTTTGCTCCTAGATGAGCCAACTTCAGGTCTAGACAGCACTTCAGCTTTGCAAGTCATTGAGTTACTTTCATCGATTGTTAAAGCAAATCATAGGATAGTGGTTCTTTCAATCCACCAACCCAGCTATAGAATATTGCAGTATGTTTCCAAGTTCTTGATCCTCTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAACAACTAGAGGAAACCATAAGTAAACTGGGATTTCAAATCCCAAAACAGCTGAATGCTTTAGAATTCTCTATGGAAATTATACGAGGGTTGGAAGATTCCAGTTCCAAATATGAATGTTCCATCATTGAGGAAAAGGAGCCATTTCCACACCTCCTGTGGCCAGAGGAAGAAAACTGTGGTGGAGTCCAAATTGTCCAATCACAGTTTACCAAGGAAAGTTTTAGCAGTCTTTGCTATGCATACTTGATAGAGATACTGGTTTTGTGCTCAAGATTTTGGAAGATCACTTATAGAACAAAACAACTTTTCTTGGCCAGAACAATGCAAGCACTAGTTGGTGGCTTTGGTCTAGGAAGTGTTTATATAAAGGTAACTAGGGATGAAGGAGGAATTGCAGAAAGGTTAGGTCTATTTGCATTCAGTCTTAGTTTTCTCCTCTCTTCTACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGAATGTTTTGATGAAAGAAGCCTCAAGGGGAGCCTATAGGATTTCCTCTTACATGATAGCCAACACTTTTATTTTCCTTCCTTTCTTGTTTGTGGTATCCACACTTTTTGCTGTTCCAGTGTACTGGCTTGTAGGCCTCAACCCTTCTCTTTCTGCCTTCACCTTCTTCACTTTTGTGGTGTGGCTCATTGTGCTCATGGCAAGTTCTCTTGTGCTCTTCTTAAGTGCAGTGTCTCCTGATTTCATTTCAGGGAACTCTCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCAGGATACTTCATTCCAAAGGAGAGCATCCCAAAGTATTGGCTTTTCTTGTACTATGTGTCCCTCTATAGGTACCCTTTGGATGCACTCCTCACAAATGAGTACTGGAATGTTAGAAATGAGTGCTTCTCTCATCAAATAGAAGGATCACAGTGCTTGATCACAGGGTTTGATGTGTTGAAGAGTAGAGGACTTGAAAGGGATAACAGGTGGATCAATGTGGGAATAATGCTGGCATTCTTTCTGTTGTATCGTGTGCTTTGTTGGATAATTCTTGCAAGAAAGGCCTCCAAAACAACAATATAA 1974 0.4129 MAACLNPPRLSTTEDDSVILFSTSNSPEESISASSSSFHHSPPPSQQQFRTAYKLSVRNLSYTLQPNKRTFLSFCHQSKKPEPLSILNSISFVARSSEIVAVAGPSGTGKSTLLRIMAGRVKDEDFDPKSISINDQPMTSPAQLRKTCGFVAQEDNLLPMLTVRETLLFSAKFRLKEMTPKDRELRVESLLQELGLLHVADSFVGDEDNRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSIVKANHRIVVLSIHQPSYRILQYVSKFLILSHGSVVHNGSLEQLEETISKLGFQIPKQLNALEFSMEIIRGLEDSSSKYECSIIEEKEPFPHLLWPEEENCGGVQIVQSQFTKESFSSLCYAYLIEILVLCSRFWKITYRTKQLFLARTMQALVGGFGLGSVYIKVTRDEGGIAERLGLFAFSLSFLLSSTVEALPIYLQERNVLMKEASRGAYRISSYMIANTFIFLPFLFVVSTLFAVPVYWLVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFLYYVSLYRYPLDALLTNEYWNVRNECFSHQIEGSQCLITGFDVLKSRGLERDNRWINVGIMLAFFLLYRVLCWIILARKASKTTI 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02820 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 313 IPR003439 GO:0005524
Vimu2g02820 657 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524|GO:0016887
Vimu2g02820 657 Pfam ABC-2 type transporter 270 338 IPR043926 GO:0140359
Vimu2g02820 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 307 IPR027417 -
Vimu2g02820 657 Gene3D - 70 336 IPR027417 -
Vimu2g02820 657 SMART AAA_5 96 283 IPR003593 GO:0016887
Vimu2g02820 657 Pfam ABC transporter 87 240 IPR003439 GO:0005524
Vimu2g02820 657 FunFam ABC transporter G family member 23 78 311 - -
Vimu2g02820 657 Pfam ABC-2 type transporter 383 591 IPR013525 GO:0016020|GO:0140359
Vimu2g02820 657 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02820 Vimu-Chr2 26065860 26068021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02820 80 300 Calmodulin-binding Proteins AT2G36910 27.273 5.40e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02820 K05681 - gmx:100783883 1105.89