Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02819 ATGCCAATCTCAGTCTGTGGAGACTCAGATTGCGAATCCTCTTGGGACCACCAAACTAGCTCCTCTCATTGTCCTCACCTTCCATCGCTACCACCACCGACCATAAACCAACAATGGCAGAATCTCCCTCTTGCTACTCCACCCTCCAAGAAGCCACGTGGCAGACCTCCAGGCTCCAAGAACAAGCCCAAATACATTCTCCCACAACCCTCCATCAAGATTCTCATTGTCAATGTCGCTCCAGGACATGACATCATTGACCTCTCCATCCTTAGTGCCTCCGGTATCATCACCACCGTCACCCTCCGCCATGTCCCCAGTGGTTCCTCCGCCGTCATGCTCCATGGACCCTTCAACTTACTTTCCCTCACTGGCTCCTACTTACACAATAACCAATACACCCTTCTCCCCGGAGCCACCCCTCCTCGTTCCTTATCCTTTGGGATACACCTCTCCACCTCTCACGGTCGAGTCTTCGGTGGCCTCGTCGCCGGTAGAGTCGTCGCCGGTGACGATGTCAACTTGACTATTTCTACCTTCGACAACCCTGAAATTTATAAATACGGTTTTGAAGATCAAGAAAGAGGTGATCATGATGACAGTAACATCAACAACAATAAAACTTGTAACCATAACCCTAGTAATTTCAACATGGGTGGCGACTTGCCAACGTTGAACTCTGCTAATTTCGGAATCCATGGGTGGTGA 708 0.5 MPISVCGDSDCESSWDHQTSSSHCPHLPSLPPPTINQQWQNLPLATPPSKKPRGRPPGSKNKPKYILPQPSIKILIVNVAPGHDIIDLSILSASGIITTVTLRHVPSGSSAVMLHGPFNLLSLTGSYLHNNQYTLLPGATPPRSLSFGIHLSTSHGRVFGGLVAGRVVAGDDVNLTISTFDNPEIYKYGFEDQERGDHDDSNINNNKTCNHNPSNFNMGGDLPTLNSANFGIHGW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02819 235 MobiDBLite consensus disorder prediction 11 25 - -
Vimu2g02819 235 ProSiteProfiles PPC domain profile profile. 55 204 IPR005175 -
Vimu2g02819 235 MobiDBLite consensus disorder prediction 192 211 - -
Vimu2g02819 235 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 185 - -
Vimu2g02819 235 MobiDBLite consensus disorder prediction 1 64 - -
Vimu2g02819 235 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 181 IPR005175 -
Vimu2g02819 235 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 214 IPR014476 GO:0003680
Vimu2g02819 235 Gene3D - 72 200 - -
Vimu2g02819 235 CDD DUF296 73 170 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02819 Vimu-Chr2 26044290 26045033 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02819 50 195 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.530 1.54e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02819 - - pvu:PHAVU_006G013800g 337.421