Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02815 ATGAGCAACAATCCAACGCCAATCGCTAACTCAGACTCCGTTTCCTCCGACGACCACCACACTGGATCCTCCTCCCAACGCACTTCACCACCGCCGCTACCACCACCACCACCAACCACCTCCGCCAATCAACATGTCACGAACCCATCTTCAAGTAAGCCACGTGGCAGACCCCTAGGTTCGAAGAACAAGTCAAAGCCCATCCCTCTGCCAGTGCCCCTACCAACTGAGCCCTCCGTAAAGGTTGTGGTTGTGACTGTGGATCCAAACAGGGACATCATGGAGTGCATCCTTGATGTTGCTCACCAAGACCATGTGAGCCTCTCCATCGTTAGTGCCATCGGCATGATCAATAGCGTAACCCTTCGCAACTCAACCCATGGAGCCCCACCCCTCGTGCTCCATGGCCCATTCAAATTACTCTCCCTCACTGGCTCCTACTTATACAGAAACGAATATACCCTTCACCTTGGAGCCACTCCTCCCCGTCCCTTACCCTTTGGAATCAACTTCTCCGCCGCTAACGGCGAAATCTTTACCGGCATTATCGGCGGCAGAGTCGTCGCCGGCGAGGGCGTCAGCTTGACAGTTTCCACCTTCAAGAATCCTGATATTTTAAAGTACGCTGCTGAAAGCGAAGAAGGGGATGACAATAACAGCGACAATGATAACAACAACCCTAATGATCTTACAGAGGGTGGCGACGACCAACGTTCAATATAA 723 0.5242 MSNNPTPIANSDSVSSDDHHTGSSSQRTSPPPLPPPPPTTSANQHVTNPSSSKPRGRPLGSKNKSKPIPLPVPLPTEPSVKVVVVTVDPNRDIMECILDVAHQDHVSLSIVSAIGMINSVTLRNSTHGAPPLVLHGPFKLLSLTGSYLYRNEYTLHLGATPPRPLPFGINFSAANGEIFTGIIGGRVVAGEGVSLTVSTFKNPDILKYAAESEEGDDNNSDNDNNNPNDLTEGGDDQRSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02815 240 ProSiteProfiles PPC domain profile profile. 77 214 IPR005175 -
Vimu2g02815 240 MobiDBLite consensus disorder prediction 43 58 - -
Vimu2g02815 240 MobiDBLite consensus disorder prediction 211 240 - -
Vimu2g02815 240 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 201 IPR005175 -
Vimu2g02815 240 CDD DUF296 88 190 IPR005175 -
Vimu2g02815 240 MobiDBLite consensus disorder prediction 1 27 - -
Vimu2g02815 240 Gene3D - 79 217 - -
Vimu2g02815 240 MobiDBLite consensus disorder prediction 1 73 - -
Vimu2g02815 240 FunFam AT-hook motif nuclear-localized protein 17 79 216 - -
Vimu2g02815 240 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 224 IPR014476 GO:0003680
Vimu2g02815 240 MobiDBLite consensus disorder prediction 28 42 - -
Vimu2g02815 240 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02815 Vimu-Chr2 25905501 25906450 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02815 53 236 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.419 9.82e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02815 - - vra:106779930 384.415